KEGG   Xanthomonas albilineans: XALC_2140
Entry
XALC_2140         CDS       T01160                                 
Symbol
rpoN2
Name
(GenBank) probable rna polymerase sigma-54 factor protein
  KO
K03092  RNA polymerase sigma-54 factor
Organism
xal  Xanthomonas albilineans
Pathway
xal02020  Two-component system
xal02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:xal00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    XALC_2140 (rpoN2)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    XALC_2140 (rpoN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xal03021]
    XALC_2140 (rpoN2)
Transcription machinery [BR:xal03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     XALC_2140 (rpoN2)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_23 HTH_IclR HTH_Crp_2 Sigma70_r4 HTH_AsnC-type HTH_11 Sigma70_r4_2 HTH_Tnp_ISL3 MarR HTH_28
Other DBs
NCBI-ProteinID: CBA16623
UniProt: D2UEM7
Position
2520008..2521465
AA seq 485 aa
MKARLQTSLGQHLVMTPQLRQAIKLLQMSSAELEVELAAAVESNPLLEWSEDAALTFEHT
DSQEASGAAADGDTLTPVADDHAEASPADSGEDWTTTDPAWSGGSGGAFDDDDTSSLAER
VAEPETLIGHLLWQLHLSPLSARDRSIGVALIDALDGDGYLREPLTAIAETLRPNIAAGE
DEILTVLHQIQRFDPTGIAARSLEECLTLQLGMLPESTPGLELAHTIVNGSLEKLPRSGI
AGLAHALKRPVADVDTAVALLRSLDPRPGKQIGELGSDTYVVPDCVVWRQRGVWHAALSA
HAQPKVTIHRGYERLIRQCGESDAGYLRGQLQEARWLLKSVEARGETLLKVTRCLLRQQA
GFLEFGEQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRAFFASGIDTDSG
GEASSTAIQAMIRRLIETENPRKPLSDAKLADLLKNTGVPVARRTVAKYREAMNIPASHE
RVRIG
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgaaagcacggctgcagacatcacttggacagcatctggtcatgacgccgcaattgcgt
caggcaatcaagctgttgcagatgtccagcgccgagctggaggtggaactcgccgcggca
gtggaaagcaacccgttgttggaatggtccgaggacgccgccctcacgttcgagcacacc
gatagtcaggaggcgagcggcgccgctgccgatggcgacaccctcactcctgtcgccgac
gaccatgccgaagcgtcgccggccgacagcggcgaggactggacaacaaccgacccggcc
tggagtggcggcagcggcggtgcgttcgacgacgacgacacgagcagcctcgccgaacgc
gtggccgagccggagacgctgatcggtcacctgctgtggcaattgcacctgtcgcccctg
tccgcacgcgaccgcagtatcggtgtcgcgttgatcgacgccctcgatggcgacggctac
ctgcgtgagccgctgactgcgatcgccgaaacactgcgcccgaacatcgccgccggcgag
gacgaaatcctcaccgtactgcaccaaatccagcgcttcgacccgaccggcatcgccgcg
cgcagcctggaggaatgcctgaccctgcaactgggcatgctacccgagtccactccggga
ctggaactggcgcacacgatcgtcaacggatcgctggaaaaactcccgcgcagcggcatc
gccggcctggctcacgccctcaaacgcccggtggcggacgtggacaccgcggtcgcgctg
ctgcgctcgctggacccgcgcccaggcaaacagatcggcgaactcggtagcgacacctat
gtcgtgccggactgtgtcgtctggcgccaacgcggcgtctggcacgcggccttgtccgca
cacgcccaacccaaggtcaccatccatcgcggctacgaacggctgatccgccaatgcggc
gaaagcgacgccggctatctgcgcgggcagttgcaggaagcgcgctggctgctcaagagc
gtggaagcccgtggcgagaccctgctcaaggtgacgcgctgcttactgcgacagcaagcc
ggtttcctggaattcggcgaacaggccctgcgccccctgaccctgcgcgagatcgccggt
gaactgggtctgcacgaaagcaccatctcccgtgccattgcccgcaaatacgtgcgcaca
ccgcgcggcaccatcccgctacgcgccttcttcgcctccggcatcgacaccgacagtggc
ggcgaggcatcgagcaccgccattcaggcaatgatccggcgcctgatcgagacggagaat
ccacgcaagccgctttctgacgccaagctggccgacctgctgaaaaataccggcgtaccg
gtagcgcgccgcaccgtggcgaagtatcgtgaggccatgaacattcccgcctcccacgaa
cgcgtgcgtatcggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

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