KEGG   Xanthomonas sp. ISO98C4: AC801_11255
Entry
AC801_11255       CDS       T06033                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
xan  Xanthomonas sp. ISO98C4
Pathway
xan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AC801_11255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xan03019]
    AC801_11255
   03009 Ribosome biogenesis [BR:xan03009]
    AC801_11255
Enzymes [BR:xan01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AC801_11255
Messenger RNA biogenesis [BR:xan03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AC801_11255
Ribosome biogenesis [BR:xan03009]
 Prokaryotic type
  rRNA processing factors
   AC801_11255
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AZU30414
UniProt: A0A3T0FZ66
Position
2642390..2646049
AA seq 1219 aa
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFM
KQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREEAPA
PVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESAPRPRQNDAGRNTRSER
GERGGQRRDGRDARSGGNGGNQQRGNGGNGNGANKERRDERRQPANGQGAQNGAQAQQQV
QAPKPPRNETQAPKQQPQQQKSKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAAQ
TLTSTAATATTSSMVSAIADAAAPTNTQTNANEAVQAHPVDVTVIESTADRGADANATAP
AQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDSDTDNDLDG
DSEGDDAGAHAHVSGAPRAGQPEFDFDDDAPAPAVRAKSEPAAQAAAKPRPVPKERAEPQ
LGSDTASTTAPVSNAVPASQAPATKPVAKADTAQDRPAAPAVATDTPAKPAPAATASTAV
STDGEAAQAAEQRPAPVAQQASAAPAPVAASAPVASTPAPAVAPAAGTAPMSATTASAPA
VASPVTNDAATGSQHQPAPADAAAPAAEAEAAKADQQRRAVSADVATPSVQAAPVQTAPA
TPADDLPAPAAGTPASQAAVVTVTSSHAEQSVSQAPSAEAATTSTSTVVQASPGAETTPV
RKPYAPVQTTMLDALSPNDAAPAVSSANEPPAAPAAAQPSQADKPKSTVVVSEAVKPVAP
SDQAEQAQDDDSNKPRGDH
NT seq 3660 nt   +upstreamnt  +downstreamnt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctataag
ggccgcatcacccggctcgagccttccctggaagcggcgttcgtggattatggcgccgag
cgtcatgggttcctgccgttgaaggaaatttcccgcgactatttccaggccggcgtcgac
cataacaaggcgaccattcgcgaattgctgcgcgaaggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgctgccctgaccacgttcatctcgctggccggc
cgttacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgccgcatcgag
ggcgaagaccgcgccgcgctgaaggaagcgctggacaagctcgatatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggccgtgacgccgaagaactgcagtgggatctg
gactatctgctgcagacctggaaggcgattgccgaagctgcgctgagcaagccggcggcc
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gacgtcggcgaaatcctggtcgacacgccggagttgtacgccgacgcccaggagttcatg
aagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgatattccgctg
ttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaacgtgcgcctg
ccctcgggcggctccatcgtggtggaccagaccgaagcgctgaccgccgtcgacgtgaac
tcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagaccaatctggaa
gcggccgaagaagtcgcacgccagttgcgcctgcgcgacctgggtggcctggtggtcatc
gacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacaggctgcagaac
gcgctcaaatacgaccgcgcacgcgtgcagcttggccgtatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtctgcccg
cgttgcgacggccatggccgcatgcgcagtgtcgagtcgctgtcgctgtcgatcattcgc
gtggccgaagagcacgccatgaaggaaaacaccgggcaggtgctggtccaggccccggtg
gaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgaaatcgagcagcgc
catgagtcgccgatcatcatcgtcgccgacgagcaactgcataccccgcactacgaagtc
acgcgcctgcgcgagaacgaactgggcgaagaaagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtgcatgcgctgaccaaggcgcagttgaacatcccggccgcc
ccggcggtgacttcgatcaagcctagccagcccgctccggtgcgcgaagaggcccctgcc
ccggtcgcgcctgtcgcggcgccggcgccggtggtgaccgtgcccattccggcaccggtc
accggcgtggtgggctggctgaagcggatcttcggcggcgtcgagcccgttgccccggcc
ccggagtcggccccgcgtccgcgccagaacgatgctggccgcaatacccgcagcgaacgc
ggcgagcgtggcggtcagcgccgcgatggtcgcgatgcccgcagcggtggtaatggtggc
aaccagcaacgcggcaatggtggcaatggcaacggcgccaacaaggaacgccgcgatgaa
cgccgtcagcctgccaacggccagggtgcgcagaacggcgcacaggcacagcagcaggtg
caggcgcccaagccgccgcgcaatgaaacgcaggcgccaaagcagcagccgcagcagcag
aagtccaagccgcagaaccagagcccacgtccgccacgtgcgcctgcgcagcaggacggc
gccccagccgagcggcagccgcgtccggcccgccaggatgagggcacggcagcggcgcag
accctgacctccactgccgcaacggcaaccacgtcgagcatggtgtccgccattgccgat
gccgctgcacccaccaatacgcagaccaacgcgaatgaagcggtccaggcgcatccggtc
gatgtcaccgtgatcgaatccaccgctgatcgcggtgccgacgcaaatgcgactgcaccg
gcccaggatgccgcaggcgacgatgctgccaatggcgaaggcggaagccgtcgccgccgc
ggtcgtcgtggtggccgtcgtcgtcgtcgtggcgccggtgccaacggagaaggtggtgcc
agcgtcgatggcctggaaggcgacgatctggacagcgataccgacaacgatctcgatggc
gatagcgaaggcgacgacgccggtgctcacgcgcatgtttcgggcgcaccgcgcgccggc
cagcccgagttcgatttcgacgatgacgcaccggcaccggccgtgcgcgccaagtcggaa
ccggcagcccaggcagccgccaagccgcgtccggttcccaaggagcgtgcagagccacag
ctcggcagtgatacagcctcgaccaccgcgccggtttccaatgccgtgccggcatcgcaa
gcgccagcaacaaaacctgttgccaaggctgacaccgctcaggatcgccctgctgcgccc
gccgttgccacggacacacccgccaagcctgcgccggctgcgaccgcgtcgactgccgtc
agcaccgatggtgaggccgcacaggctgcagagcagcgccccgcgccggtcgcgcagcag
gcatccgctgccccggccccggttgccgcctccgcacctgtggcatccacgccggcacct
gcggtggctccagccgccgggacggcaccgatgtcggctaccacggcttcggcaccggct
gttgcatcgcctgtgaccaacgatgcggcgacaggcagccagcaccagcctgcgccggca
gatgcggctgcacctgccgccgaggccgaggccgcgaaggccgaccagcagcggcgcgct
gtgtcggcggacgtggcaacgccgtcggtgcaagcagcgccggtgcagacggcacctgca
acgcccgctgacgacctaccggcacctgcggcaggtacgcccgcgtcgcaggccgcagta
gtcacggtcacgtcgtcgcacgccgagcaatctgtttcgcaggcgccatcggccgaggcg
gcaacgacctcgacctcgacggttgtgcaggcaagcccaggggctgagaccacgcccgtg
cgcaagccgtatgctccggtacagaccaccatgctcgatgcgttgagcccgaacgatgct
gcgccagcagtctcctcggccaacgagcccccggcagcccctgcagcagcgcagccatcg
caggcagacaagccgaagtcgacggtggttgtgtccgaagcagtcaagccggttgcgcca
tcggaccaagccgagcaggcgcaggatgacgacagcaacaagccgcgtggcgatcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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