KEGG   Xanthomonas axonopodis Xac29-1: XAC29_13670
Entry
XAC29_13670       CDS       T02500                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
xao  Xanthomonas axonopodis Xac29-1
Pathway
xao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XAC29_13670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xao03019]
    XAC29_13670
   03016 Transfer RNA biogenesis [BR:xao03016]
    XAC29_13670
Enzymes [BR:xao01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     XAC29_13670
Messenger RNA biogenesis [BR:xao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     XAC29_13670
Transfer RNA biogenesis [BR:xao03016]
 Prokaryotic type
  tRNA degradation factors
   XAC29_13670
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 KhpA-B_KH S1_2 Phage_tube KH_5
Other DBs
NCBI-ProteinID: AGH78170
UniProt: M4UCK9
Position
complement(3154853..3156967)
AA seq 704 aa
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVQASAE
NT seq 2115 nt   +upstreamnt  +downstreamnt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcactcttgagacgggc
gaaatcgctcgccaggcaggcggcgccgtgatcgtcaaggtcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtc
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcctcggctgcactgtcgctggca
ggcactcccttcaagggcccgatcggcgccgccaaggtcggctacaagaacggcgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagttggtcgtggccggt
accgccaacgcggtgctgatggtcgagtccgaagccgagttgctgtccgaagaagtcatg
ctgggcgcagtgacgttcggccatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaggccggcaccaagccgtccgactgggtggccccggcgaagaacgacggc
atgatcgctgccctgaaggaagcggtgggcgaccagctggcgtcggcgttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttccgcgatcaagaaggacgtgctgggcgcactg
gcgccgcgcgccaccatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggttcggtgttgagcaccaaggtgcgtatcgacggtcgt
gcactggataccgtgcgtccgatcagcgccacggccggtgtgttgccgcgtacccatggc
tcggcgctgtttacccgcggcgagacgcaggcgatcgtgatcaccacgctgggcaccgcg
cgcgacggtcaggtcatcgacgcggtgtcgggcgagtacaaggaaaatttcctgttccat
tacaacttccctccgtactcggtgggcgagtgcggtcgtttcggtgcgccgaagcgtcgc
gaaatcggccacggccgcctggccaagcgcggcgtgctggcagtgatgccgaccctggaa
gaattcccgtacaccatccgcgtggtctcggaaatcaccgaatccaacggttcgtcctcg
atggcatcggtctgcggcagctcgctggcgctgatggatgctggcgtgccgatcaaggcg
ccggtcgcgggtatcgcaatgggcctggtcaaggaaggcaacgacttcgtcgtgctctcc
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctcaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggcacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtcaatgccatcgctgcgcaggctgcgaagtcgcgcatcgaacagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgcctgtcgatcaaggcagtggaagaaggcgaaggcgtgcag
gcgtcggccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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