KEGG   Xanthobacter autotrophicus: Xaut_3138
Entry
Xaut_3138         CDS       T00581                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
xau  Xanthobacter autotrophicus
Brite
KEGG Orthology (KO) [BR:xau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xau03016]
    Xaut_3138
Enzymes [BR:xau01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Xaut_3138
Transfer RNA biogenesis [BR:xau03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Xaut_3138
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: ABS68368
UniProt: A7IK25
Position
complement(3483210..3484358)
AA seq 382 aa
MDPISSTEALAAACERLARHPFVTVDTEFLRETTFWPKLCVVQVASPEEAVLIDALADGL
DLAPFYRLMANERVMKVFHAGRQDIEIIWHQARLIPHPVFDTQVAAMVLGYGDSISYDQL
VQRVTGHALDKSSRFTDWSRRPLSQAQIVYAVADVTHLRDIYIKLTTDLETRGRAEWVGE
EMHVLTSPATYEQHPDSAWERLKSRVRKPRELAVLVEVAAWREREAQTRDLPRGRVIKDE
VIGEIAVQQPQTPEKLAELRSLPKGFERSRYGEAVLEAVRRGVARDPKTLPRIERDKPLP
NGASATVELLKVLLRMTAEQNAVAAKVIATTEDLERIAVSDEADVQALKGWRRELFGERA
LALKAGRLALAVNHGRVIAVEK
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggatccgatctcctcgaccgaggcgctggcagcggcctgcgaacgcctcgcccgccac
cctttcgtcaccgtcgacacggaattcctaagggaaaccacgttctggccgaagctctgc
gtcgtgcaggtcgcctcgccggaagaagccgtgctcatcgacgcgctggcggacgggctc
gatctcgcccccttctaccggctcatggccaatgagcgggtgatgaaggtgttccacgcc
ggccggcaggacatcgagatcatctggcaccaggcccgactcatcccgcatccggtgttc
gacacccaggtggcggcgatggtgctcggctatggcgacagcatctcttatgaccagctg
gttcagcgcgtcacgggccacgccctcgacaagtcgtcgcgcttcaccgactggtcgcgc
cggccgctgagccaggcgcagatcgtctatgccgtggccgacgtcacccatctgcgcgac
atctacatcaagctgacaacggacctggagacgcggggccgcgcggagtgggtgggcgag
gaaatgcacgtcctcacctcccccgccacctacgagcagcacccggacagcgcctgggag
cggctgaagtcccgcgtgcgcaagccgcgcgagctggccgtgctggtggaggtggccgcc
tggcgcgagcgcgaggcccagacccgcgacctgccgcgcggccgcgtgatcaaggacgag
gtgatcggcgagatcgcggtgcagcagccgcagacgccggagaagctggccgagctgcgc
tccctgcccaagggcttcgaacgctcgcgctacggcgaggcggtgctggaggcggtgcgt
cggggcgtcgcccgagaccccaagaccctgccgcgcatcgagcgcgacaagcccttgccc
aacggtgccagcgccacggtggaactgctgaaggtgctgctgcgcatgacggcggagcag
aatgcggtggccgccaaggtgatcgccaccaccgaggacctggagcgtatcgcggtcagc
gacgaagccgacgtgcaggcgctgaagggctggcgccgcgagctgttcggcgagcgcgcc
ctggccctgaaggccggccgcctggcgctggcggtgaaccacggccgcgtcattgcggtg
gagaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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