KEGG   Xanthomonas axonopodis pv. citrumelo F1: XACM_1097
Entry
XACM_1097         CDS       T01616                                 
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
xax  Xanthomonas axonopodis pv. citrumelo F1
Pathway
xax03030  DNA replication
xax03430  Mismatch repair
xax03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XACM_1097 (holB)
   03430 Mismatch repair
    XACM_1097 (holB)
   03440 Homologous recombination
    XACM_1097 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xax03032]
    XACM_1097 (holB)
   03400 DNA repair and recombination proteins [BR:xax03400]
    XACM_1097 (holB)
Enzymes [BR:xax01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     XACM_1097 (holB)
DNA replication proteins [BR:xax03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     XACM_1097 (holB)
DNA repair and recombination proteins [BR:xax03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     XACM_1097 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA AAA_5 AAA_22 TIP49
Other DBs
NCBI-ProteinID: AEO41384
Position
1209194..1210153
AA seq 319 aa
MTAAFSPWQQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAASPDPTLA
QRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIIIEQVREISQKLALTPQYGIAQVVIVD
PADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAW
LLSQGVSERAAQEALDAARGHPGLAAQWLREDGLAVRRAVAQDLEQIASGRAGAVDVAQR
WTSDGQADQRLRHAADLALAQASAGLTDPSRLHKLATWFDAANRTRDLLRTTVRADLAVT
ELLLSWREGERQPRSRGTR
NT seq 960 nt   +upstreamnt  +downstreamnt
atgaccgccgcattttcgccctggcagcagcgcgccttcgaccagaccgtggctgcgctg
gatgcggggcggcttggacatgggctgctgatctgcggcccggaagggttgggcaagcgt
gccgtcgccctggccctggccgagcacgtcctggccgcctcgcccgacccgacgctggcg
cagcgcacgcgccagctgattgccgccggtacccatccggacctgcaactggtctcgttc
attcccaatcgcaccggcgacaaactgcgtaccgagatcatcatcgagcaggtgcgcgag
atttcgcagaagctcgcgctgaccccgcagtacggcatcgcccaggtggtgatcgtcgac
ccggccgatgcgatcaatcgctcggcctgcaatgccttgctcaagaccctggaagaaccg
tcgccggggcgctacctgtggttgatcagcgcgcaaccggcgcgtctgccggcgaccatc
cgcagccgttgccagcgcctggaattcaagctgccgcctgcgcacgaggcactggcctgg
ttactgtcgcaaggcgtgagcgagcgcgccgcgcaggaagcgctggacgccgcgcgcggc
caccccggcctggccgcgcagtggttgcgcgaagacggcctggccgtgcggcgtgcggtc
gcgcaggatctggagcagatcgccagtggccgcgccggcgcagtcgatgtcgcgcagcgc
tggaccagcgatggccaggccgaccagcgcctgcgccatgccgccgatctggcattggca
caggcatcggccggcttgaccgatccatcgcggttgcacaagctggcgacctggttcgac
gctgccaaccgcacccgcgatctgctgcgcaccaccgtccgcgccgacctggcagtgacg
gaattattgctgtcctggcgcgagggagagcgccagccacgttctaggggaactcgatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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