KEGG T01616: XACM

Xanthomonas axonopodis pv. citrumelo F1: XACM_1570

Entry

XACM_1570         CDS       T01616

Symbol

sbcB

Name

(GenBank) exonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

xax Xanthomonas axonopodis pv. citrumelo F1

Pathway

xax03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:xax00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    XACM_1570 (sbcB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xax03400]
    XACM_1570 (sbcB)
Enzymes [BR:xax01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     XACM_1570 (sbcB)
DNA repair and recombination proteins [BR:xax03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     XACM_1570 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     XACM_1570 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      XACM_1570 (sbcB)

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T

Other DBs

NCBI-ProteinID:

AEO41851

Position

complement(1766325..1767770)

AA seq 481 aa
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV
TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD
VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV
LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK
SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA
DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE
QERWNVYRRQRLFEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWGSDLQRT
L

NT seq 1446 nt +upstreamnt +downstreamnt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggatccacgccgcacc
cgcatcgcacagttcgctgcggtgcgcaccgatgcgcagttgcgcgtgatcgaagagccc
atcagctttttcgtgcagccggccgatgatctgctgccctcgccctatgccaccatggtg
accggcatcaccccgcaacatgcgctgcgcgaaggcgtcaccgaagcagaggcgttcgcg
cgcatcgccgaacaaatgggccggccccagacctgcacgctgggctacaactcgatccgc
ttcgacgacgaattcatccgctgcggcctgttccgcaatttctacgacccgtatgagcgc
gagtggcgtggcggcaattcgcgctgggacctgctggatgtgctgcgactggtccatgcg
ctgcgcccggacggcatcgtctggccgcagcgcgaagatggcgccacctcgttcaagctg
gagcacctggccgatgccaacgatgtgcgcgaaggcgatgcgcacgaagccttgtcggac
gtgtacgccaccatcggcatggcgcgcaaattccagcagcaccagccaaagttgtgggac
tacgcgctgcgcctgcgcgacaagcgctttgccgccaccttgctggatgtcatcgccatg
cagccggtgctgcatatctcccagcgctaccccgcctcgcgcctgtgcgccgcagcggtg
ctgccgctgacgcgccacccgcgcatcgacagccgcgtgatcgtgttcgatctggagggc
gacccggaggtgttgttgcggctgagccccgacgatattgccgaccgcctgtacatccgc
gccgcggatctgccggaaggcgaacagcgcattccgttgaaggaagtgcatctgaacaag
tcgcccgcgctggtggcctggcagcatctgcgcgctgcagattttcagcgcctgggtgtg
gatcacgacgcggtagtggccaaggcggcacgcttgcgcgccttgggccctgaacttgcc
gagaaggtgcgccaggtctacggcagcgaacgcgccgcggcagcagcggtcaacgatgcc
gatgcctcgctctacgatggatttctggccgaaggcgacaaacgcctgcttgcacaggtc
cgcgccagcgcgccggacgaactgggcgcgctggaagcgcgctttcgcgacccgcgcctg
atcgagctgctgtttcgctaccgcgcgcgcaactggccgcagacactctcattcgaggaa
caggagcgctggaacgtgtatcgccgccagcgcctgttcgaagaccgcggcctgggtgaa
gtcacgctggagcaataccacgcgcagattgcggatttacggcgtactcaccccgacgat
gctaccaagcaagccctactcgatcagctcgccgcctggggttcggacctccaacgcacg
ctatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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