KEGG   Xenorhabdus bovienii SS-2004: XBJ1_0906
Entry
XBJ1_0906         CDS       T01186                                 
Symbol
ybjF
Name
(GenBank) putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain
  KO
K03212  23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
Organism
xbo  Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:xbo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xbo03009]
    XBJ1_0906 (ybjF)
Enzymes [BR:xbo01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.189  23S rRNA (uracil747-C5)-methyltransferase
     XBJ1_0906 (ybjF)
Ribosome biogenesis [BR:xbo03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    XBJ1_0906 (ybjF)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 MTS Methyltransf_25 Methyltransf_15 Cons_hypoth95 Methyltransf_12 Methyltransf_11 Methyltransf_32
Other DBs
NCBI-ProteinID: CBJ80047
UniProt: D3UZL8
Position
complement(915529..916662)
AA seq 377 aa
MQCAQYTAGHCHSCQWLNKSYSQQLSDKQQHLQQLLRETSATYWLPPVSSLISGFRNKAK
MVVSGSVERPQLGMLHRDGRTVDLCDCPLYPQYFQLVFESIKIFIAKAGLVPYNVARKKG
ELKYILLTESRASGEMMLRFVLRSETKLAQLEHALPWLQEQLPQLTVISANIQPTHMAIL
EGEKEVIFTEHKMLKEIFNGIPLYIRPRSFFQTNPEIASALYATAGRWVRELNISSMWDL
FCGAGGFGLHCADKETRLTGIEISAEAIACAKNSAKSLGLEQVEFQALDSTHFALDKAQL
PELVLVNPPRRGIGKALCEYLSRMAPKFILYSSCNAETMAKDIAALEQYRIEKVQLFDMF
PHTEHYETLALLIFDGK
NT seq 1134 nt   +upstreamnt  +downstreamnt
atgcaatgtgcgcagtataccgcggggcattgtcactcctgccagtggctcaataagtcc
tattcacaacaattatctgataaacaacaacatttacagcagcttttacgggagacgtca
gcaacgtactggctgcctccagtcagcagcctgatcagtggatttcgtaataaggccaag
atggtggtaagtggcagtgttgaacgcccacagcttggcatgcttcaccgtgatggcaga
acggtggatctttgtgattgtcctttgtatccacaatattttcagctggtatttgaatcg
ataaaaatatttatcgctaaagctgggttggttccgtataacgttgcacgtaaaaaaggg
gaattgaaatatattctgctgacagaaagccgtgccagcggtgaaatgatgctgcgtttt
gtcctgcgctcagaaacaaaactggctcagttggaacatgctttgccgtggttacaggaa
caactaccacaattgacggttatttctgccaatattcaaccgactcatatggcgattttg
gaaggggaaaaagaagtcatttttactgagcataagatgctgaaggaaatcttcaacgga
attccgctgtatattcgtccccgtagttttttccagacaaatccagaaattgcttcggcg
ctttatgcgacggctggtcgttgggtcagagagctgaatatcagcagcatgtgggatctc
ttttgtggagcaggaggttttgggctgcactgtgcagacaaagaaaccagactgacaggg
attgagattagtgcagaggccattgcctgtgccaaaaactcggccaaaagtcttggtctt
gagcaggttgaatttcaggcattggattctacacattttgcccttgataaagcgcaactc
cctgaactggtgctggtgaatcctcctcgcaggggaattggtaaggcgttatgcgaatac
ctcagtcggatggcacctaaatttattctctattcaagttgtaatgctgaaacaatggca
aaagatattgctgcgcttgagcaatatcgaatagaaaaagtgcaattattcgatatgttc
ccccatacagaacattatgaaacgctggcgttactgatctttgatggaaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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