KEGG   Xenorhabdus bovienii SS-2004: XBJ1_2870
Entry
XBJ1_2870         CDS       T01186                                 
Symbol
sbcB
Name
(GenBank) exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
xbo  Xenorhabdus bovienii SS-2004
Pathway
xbo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    XBJ1_2870 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xbo03400]
    XBJ1_2870 (sbcB)
Enzymes [BR:xbo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     XBJ1_2870 (sbcB)
DNA repair and recombination proteins [BR:xbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     XBJ1_2870 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     XBJ1_2870 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      XBJ1_2870 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T DUF1122
Other DBs
NCBI-ProteinID: CBJ81994
UniProt: D3V832
Position
2819631..2821058
AA seq 475 aa
MSNDKTPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPE
AVMITGITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHD
AMSDVYATIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSN
ISLIAPLAWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLM
HINKCPIIAPENTLRTEDAERVGLNRDQCAKNLAILRSNPQIREKVVELFSQPEEFPESD
NVDTKLYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNY
DEQQRWLYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDYAVQLAG
NT seq 1428 nt   +upstreamnt  +downstreamnt
ttgagtaacgataaaacccccactttctatgttcatgattatgaaaccttcggcaagcac
cctgccttagaccgccctgcccagtttgcgggaattcgcaccgacagtgattttaatatc
atcgaagatcctttggtggtgtactgtttgcctgctgacgattacctgcccgatcctgaa
gctgtgatgattacggggattacaccacagttagcattaaaaaaaggggtcaatgaagct
gaatttgcccgccagatccatgaagcattcagcaagcccaatacctgtattatcgggtat
aacaatattcgttttgatgacgaagtcagccgaaatatcttttatcgcaatttttacgat
ccttatgcctatagctggcaaaaaggtaattcccgctgggatctgcttgatgtattacgt
gcctgctatgccctacgcccagaaggcattatctggccagaaaatgaggatggtctgccc
agttttaagctagaaaacctgacgaaagccaacggagttgaacatactcaggctcatgat
gctatgtccgatgtttatgccactatcgcgatggcaaaacgggtaaaaaaagcccaacct
cgcttgtttgattactttttccaattaagaaacaaacagaaggtcagtaaccagattgat
attccgcagatgaagccactggtacatgtatcaggaatgttcggaactctgcgcagcaat
atcagccttatagcacctttggcatggcacccgacaaatcgcaatgcggtcatcatgtgt
gatttagcgggtgatatttccccgttactagaactcagcgcagacgaattgcgcgagcgc
ttgtatacccgacgtaatgaactacagccaggccaagctccagtacccattaaattgatg
catatcaataaatgcccgattattgctcctgaaaatacactacggacagaagatgcggaa
cgagtgggattgaatcgcgatcaatgtgcaaaaaatctggctatattgcgcagtaatccg
caaatcagggaaaaagtggttgagctattttctcaaccagaggaattccctgagtccgac
aatgtcgataccaagctatatagcggttttttcagtgatgccgataaaactgcgatggaa
attatccgggaaactgcacccaaaaacttaccggcactggatttaacatttcaggatcca
cggattaaaacactcctgttccgttaccgcgccagaaactatccggcaacgctgaattat
gatgaacaacagcgctggctatatcatcgccgggagatattgacacaggaaaatatcagc
caatatcttgcggccattgaacagctctttgttgaataccaatctgatgaagaaaagtgc
cgccagttaaaagcactagttgattatgcagttcagctggctggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system