KEGG   Xanthomonas campestris pv. campestris 8004: XC_2040
Entry
XC_2040           CDS       T00247                                 
Name
(GenBank) VirD4, Type IV secretory pathway, VirD4 components
  KO
K12071  conjugal transfer pilus assembly protein TraD
Organism
xcb  Xanthomonas campestris pv. campestris 8004
Brite
KEGG Orthology (KO) [BR:xcb00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:xcb02044]
    XC_2040
Secretion system [BR:xcb02044]
 Type IV secretion system
  Conjugal transfer pilus assembly protein
   XC_2040
SSDB
Motif
Pfam: TraG-D_C TrwB_AAD_bind DUF87 TniB
Other DBs
NCBI-ProteinID: AAY49101
UniProt: A0A0H2X786
Position
complement(2453975..2456164)
AA seq 729 aa
MSGKQPVEVLLRPAVELYTVAACAGAAFLSLVAPWSLALSPGMGVGSALAFSAYGAIRYR
DARIILRYRRNIRRLPRYVMTSKDVPVSQQRLFIGKGFLWEQKHTHRLMQTYRPEFRRYV
EPTPAYRLARRLEERLEFAPFPLSRLPGLTGWDVPFNPVRPLPPVGGLPRLHGIEPEEVD
VSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRKNAAGEHEVVIVIDPKGDADLLKR
MYVEAKRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREF
AWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAK
LNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
LVSVAGHIYKHGINDGLPDASASALVPINIHADEFNELMGDEFIPLINKGGGAGLQVTAY
TQTLSDIEARIGNRAKAGQVIGNFNNLFMLRVRETATAELLTRQLPKVEVYSTTIVSGAT
DSSDIRGATDFTSNTQDRISMSSVPMIEPSHVVGLPKGQCFALLQGGQLWKIRMPLPAPA
PDEVMPQDLQQLAGYMRQTYTDATQWWEYTSSSVMQDAALPGDLLDEVVTAVPIADAGAI
DDSGNEASP
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgtcgggcaaacagccggttgaagttctacttcgcccagcagtggagctatacaccgtc
gcagcgtgtgcaggcgccgcgtttctgtccttggtggccccgtggtcgcttgcgctgagt
ccgggcatgggcgtcggcagcgcgctggcattcagtgcctacggcgcgattcgataccgc
gatgcccgcatcatactgcgctaccggcgcaacatccgccgcctgccgcgctatgtgatg
acgagcaaggacgtgccggtcagccagcagcggctcttcatcggcaagggctttctgtgg
gagcagaaacacactcatcggctgatgcagacgtaccggccggagttccgccgctacgtt
gaaccgactcctgcatatcggctggcaaggcggctggaagaaagattggagttcgcgccg
tttccgctttcgcgcttgcctgggctcacgggctgggatgtgcctttcaatccggtgcgg
ccgctgccgcccgtgggtggcctcccgcgactgcatggcatcgaaccggaggaagtggac
gtcagcctgccgctgggcgagcgcgtcgggcattcgctggtattgggtacaacgcgcgtg
ggcaagacacggctcgctgaattgttcgttacccaggacatccgccgcaaaaacgccgca
ggcgagcatgaagtcgtcatcgtcatcgaccccaagggcgatgctgatctcctgaagcgc
atgtacgtcgaggccaaacgcgcgggccgcgaaggcgagttctacatctttcaccttgga
tggccggagatttccgcgcgctacaacgccgtggggcgcttcgggcgcatctcggaagtc
gccacccgcattgccggtcagctctctggtgaaggcaacagcgcagctttccgcgagttc
gcttggcgcttcgtgaacatcatcgcgcgggcattggtggagctgggacagcgcccggac
tatatgctgatccagcggcacgtcatcaacatcgacgcgctgtttatcgagtacgcccag
cattacttcgcaaagaccgagcccaaggcctgggaggtgatcgtccagattgaggccaag
ctcaacgagaagaacatcccgaggaacatgatcggacgcgagaagcgcgtcgtggcgctt
gagcaatacctctcccaggcgcgcaactacgatccagtgctcgacggcctgcgctcggcg
gtccggtacgacaagacgtatttcgacaagatcgtcgcatcgcttctgcctctgctggag
aagctcaccagcggcaagatcgcgcagctcctggcgccgaactactcagacctggcggac
ccgcggccaatcttcgattggatgcaggtgatcaggaagcgtgccgtggtctatgtgggc
ctggatgcgttgtccgacgccgaggtcgccgcagcggtcggaaactccatgttctccgac
ttggtatcggttgctgggcacatctacaagcatgggatcaacgatggcctgccggatgca
tcggcgagcgcgctggtgccgatcaatatccatgccgacgagttcaacgagctgatgggc
gatgagttcataccgctcatcaacaagggcggcggcgccgggctgcaagtcaccgcctac
acgcagacgctctccgacattgaagcccgaattggcaaccgcgcgaaggccggtcaggtt
atcggcaacttcaacaacctgttcatgctgcgggtccgggagacggccactgctgaattg
ctgacccggcaattgcccaaagtcgaggtctatagcaccaccatcgtctcgggcgccacc
gacagttcggacattcgcggcgcgacagacttcacgtccaacacccaggaccgtatcagt
atgtccagcgtgcctatgatcgagccatcgcacgtggtcggcctgcccaaaggacagtgc
ttcgcgctgctgcagggcggtcagctctggaagatcagaatgccgctgcctgcccctgcc
cccgatgaggtcatgccgcaggatctgcaacagctcgcgggctacatgcgtcagacctac
accgacgccacgcagtggtgggagtacaccagctcttcggttatgcaggacgcggccttg
cctggcgacctgcttgatgaggtggtcaccgctgtgcccatcgccgacgccggcgcgata
gatgacagcggcaacgaggcctcgccatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (7)   

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