KEGG T00247: XC

Xanthomonas campestris pv. campestris 8004: XC_2964

Entry

XC_2964           CDS       T00247

Name

(GenBank) RNA methyltransferase

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

xcb Xanthomonas campestris pv. campestris 8004

Brite

KEGG Orthology (KO) [BR:xcb00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xcb03009]
    XC_2964
Enzymes [BR:xcb01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     XC_2964
Ribosome biogenesis [BR:xcb03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    XC_2964

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 MTS PCMT RrnaAD Methyltr_RsmB-F Cons_hypoth95 Methyltransf_11 TRAM Met_10 Methyltransf_15 Methyltransf_12 Methyltransf_23 UPF0020 Methyltransf_32 PrmA

Other DBs

NCBI-ProteinID:

AAY50012

UniProt:

Q4USG1

Position

complement(3548536..3549870)

AA seq 444 aa
MARSRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHF
DEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQ
TVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP
QLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQP
GGVDSVHPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDR
VLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQ
TAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSL
LSAGAMDMFPHTAHVESIAVFEKR

NT seq 1335 nt +upstreamnt +downstreamnt
gtggccagatccagaaaccgtttcgaccgtaccccgttccagaccgcgatcaccgacctg
agccatgacggccgcggtgtggcgcgccgcgatggcgagggcggcaaggtcaccttcatc
agtggcgcgctgccgggtgaggtggttgtcgccgagcccaccgcacgcagccgccatttc
gatgaggccaaaacggtggaagtgctgcaggcatcgccgcagcgggtggcgccgcgctgc
ccgcattttggtgtgtgcgccggttgcgtgctgcagcatctggaagaatcgcagcagatc
gtggccaagcagcgcgtgctgatggacaacctggagcgcatcggccacgtcacgccgcag
acggtgctgccggccctggtgggcgatacctggggctatcgccgcaagggccgcttttcg
gtgcgccgggtcgagaagaaggacaagaccctggtcggcttccgcgaactggacccgcgc
ttcgtggccgacctgtcggtctgctacacggtgattccgcagattggcgagaagattccg
cagctggcggcgctggtcgaaggcatggacggcaagcgcgacattccgcagattgaattc
atcgccggcgacgatgccgtggcgctgaccatccgccatctgcagccgctcagcgcacgt
gacgagcaggccttggtggagttcgcccaggcgcacgattttgcgatcttcctgcagcct
ggcggcgtggacagtgtgcatccgttgtggccgcaagaggtgccgctgtcgttccggttg
ccgaaatgggacgtggagctggcgtttcgtccgttggacttcatccaggtcaatgcctcg
ctcaatcagaagatgattgcccacgccctggcattgctcgatgccaagcccgatgaccgg
gtgttggacctgttctgtggtctgggcaatttcaccctgccgctggcgcgtaccgtgcgc
gaagtcgtgggcgtggagggcgacgccggtttggtggcgcgtgcacgcgagaatgcacag
cgtaacgggctggacaatgcgcagttctacgcagcggacctcacgcaagatcagcggcag
actgcgtggatgcgccagggcttcgacaagctgttgctggatccaccgcgctccggcgcc
atcgacgtgctgcagcagctgccgctgaagcagttcaagcgcatcgtctatgtgagctgc
cacccagggtcattggcacgcgatgctggctacctggtgaacgagcagggcttcagcctg
ctcagtgccggtgcgatggacatgttcccgcacaccgcccatgtggaaagcatcgcggtg
tttgagaagcgctag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (17)   
   Pfam (17)   
All databases (27)   

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