KEGG   Xanthomonas campestris pv. campestris ATCC 33913: XCC2642
Entry
XCC2642           CDS       T00083                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
xcc  Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xcc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XCC2642 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xcc03019]
    XCC2642 (deaD)
   03009 Ribosome biogenesis [BR:xcc03009]
    XCC2642 (deaD)
Messenger RNA biogenesis [BR:xcc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     XCC2642 (deaD)
Ribosome biogenesis [BR:xcc03009]
 Prokaryotic type
  rRNA helicases
   XCC2642 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 P-loop_SecA adh_short Flavi_DEAD
Other DBs
NCBI-ProteinID: AAM41914
UniProt: Q8P7G9
Position
complement(3133068..3134996)
AA seq 642 aa
MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGNAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD
GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
AAASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPRGPRSE
NT seq 1929 nt   +upstreamnt  +downstreamnt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcagatgctgtg
atgaaggcggttgccgccgtcggctacgagaccccttcgccgatccaggccgccaccatc
ccggcgctgctggccggtcgcgacgtgctcggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgaaccaggtcaagccgcaggcg
ctggtgctggcgccgacgcgcgagctggccatccaggtggccgaagccttccagaaatat
gccgaagccatccccggtttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctcagcgcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgttgttctccgcgaccatgccgccggcgatccgccgcatt
gcgcagacctatctgaaggaccctgccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccgct
accgaagagctggcgcaaaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgtgaaaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggaacgcgtcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgtgccggccgcaacggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggtcagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgacatcgctgcggcaatggccaagttgctgcaggggaacgccccgttcctgctg
actccgccggtgcgtggcgcgcgcgaagacttcgcaccgcgtgagcgcaacgaccgcgcc
gaccgtggcgagcgcccgcgcttcgagcccaagttcgagcgtggcccgcgtgcgcccgac
ggcgagcgtggtgcacgtccgccgcgtccggaccgcccggcctatggtgaagacgccggc
gccgagcgtccgcgccgcgagccgagcgcgccgcgcggcgagccggagttcggcatggag
agctaccgcatcgaagtgggccacacccatggcgtgaagccggccaacatcgtcggcgcc
atcgccaacgaagccggcctggaaagccgctacatcggccgcatcgacatccaggacgat
tactcgatcctggatctgccggccgacatgccgcgcgaactgctgacccacctgaagaag
gtctgggtgtcgggccagcagctcaacatgcgcaagctggaagagggcgaggcggccgct
gcggcggcgtccaagcccaagttcccgcgtggccccaggccggcgggccggcccaaccgg
ccgatggaccgcgctggcgcgccgcaccgcaagggtccgcccaagccgcgtggcccgcgt
agcgagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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