KEGG   Xanthomonas citri pv. citri MN12: J164_03769
Entry
J164_03769        CDS       T03735                                 
Name
(GenBank) Superfamily II DNA and RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
xcm  Xanthomonas citri pv. citri MN12
Pathway
xcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xcm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J164_03769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xcm03019]
    J164_03769
Enzymes [BR:xcm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     J164_03769
Messenger RNA biogenesis [BR:xcm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     J164_03769
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA AAA_22 HEM4
Other DBs
NCBI-ProteinID: AJY97029
UniProt: A0A8I0H6F9
Position
4258694..4260076
AA seq 460 aa
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSNGPRQANTGAGAGRRDGGRGGQRPSGTR
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgtcttttgaatccctgggccttgcgcccttcctgttgcgcgcgctggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgctggtcctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgttg
cagcacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccctccatcaagcgcatcctgactaagttgccgcgccag
gatcgtcaaacgctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccggtgcagatccaggtcaccccgagcaataccgtggccgagagc
atcacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcatctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcccgtaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaaa
agccaggggcagcgcatgcgtgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgatcaactgccgaaggtcatcaac
tacgatctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaat
ggctcaaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgcgccgggtcgtgccgagcagccgggtggcgatcgc
gcgccgcgcaagagccatgcccgtcgtccgcacggcgatgcaccacgtcaggcgcacgcg
catgccggcccgaagaagccgggtggccagcgcagcaacgggccgcgtcaggccaacact
ggcgcgggtgcaggccggcgcgatggtggtcgtggtggtcagcgtccgagcggtacgcgc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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