KEGG   Xiphophorus couchianus (Monterrey platyfish): 114134116
Entry
114134116         CDS       T05908                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013  Nucleocytoplasmic transport
xco03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    114134116 (pnn)
   03015 mRNA surveillance pathway
    114134116 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xco03019]
    114134116 (pnn)
   03041 Spliceosome [BR:xco03041]
    114134116 (pnn)
Messenger RNA biogenesis [BR:xco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     114134116 (pnn)
Spliceosome [BR:xco03041]
 Complex C
  Other components
   EJC/TREX
    114134116 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 114134116
NCBI-ProteinID: XP_027856236
Position
19:9009989..9015397
AA seq 665 aa
MAVAVRSLQDQLEKAKENLKNVEDNIRKLTGRDPNESRPGQLRRLSGPMVGLGGGRGRGI
NLLRRSLSDMGSSGPPAKQRDIEGALLRLAGDQRARRDVRHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKLKRRSEIEQK
LEVQAEAERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWNSHNNHLVKYIRTK
TKPHIFYRPGKMCSATQKLLEESTKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGS
SASRMDRPAEGKPAGQVEKQRGKRGESRREEDEDEDEDEEEEREKEIGGGDAEEGEKEEL
VKIEEVEEEVMEVREEGSKEEAGEEQKEKSEKAASPESEEMEVEKEDKGKEVEVETDRKQ
ESTEIQEEKTPDVQSCEAAVSGLEVPDSSDEPPQSLAAGEPAAQSPVTETASPSQEPQKA
SAALAQDPTSPTQDNMATESSVQDSTAENQTEERKSKEDEEEGPQKLPDSKEVDAPAKEE
GEEQGRGRKKEKDAKKHRSRSNSSSSSSSGSSSSGSSSSSSGSSRSSSSSSSSSTSSSRS
RDSDKRKRRPSDRGRDKKKEERSRQKSGGRDSAERRKRRSEEKKGRPSRSDREHKNRGDR
KDKRR
NT seq 1998 nt   +upstreamnt  +downstreamnt
atggcggtggctgtgcggagcttgcaggaccagctcgaaaaagccaaagaaaacttgaaa
aatgtggaggataatattcgtaaactgaccgggcgggaccctaatgaatcacgaccgggt
cagctgcgtcggctcagtggccccatggtaggcctgggaggaggtagaggcagaggaatc
aatctcctcagacgcagtctctcagatatgggaagcagcgggccccctgccaagcaaagg
gacatcgaaggagctctgctgaggctggcaggtgatcagagggccaggagagacgtgcgt
catgacagtgacgccgaggacgatgacgatgtcaaaaaaccggcgttgcagtcatctgta
gtagctacctccaaggagagaacacgccgagacctcattcaggatcaaaccatggatgaa
aaggggaaacagaggaatcggcgcatgtttggcctgctgatggggacactgcagaaattc
aagcaagaatcgaacgtctcatctgagaagctaaagcgacgttcagagatagagcagaag
ctcgaggttcaagctgaggctgagaggaaaaaagtagagaatgaaaagcgagaactgttc
gaggagagaagagccaagcagacagagctgagactgctggaacagaaagtagaattggct
cagctgcaagaggagtggaacagccacaataatcacctggtgaaatacattcgcaccaaa
accaagcctcatatcttctaccggcctggaaaaatgtgctccgcaactcagaaactcctc
gaagaatccaccaagaaactcaatgctgtgtttgaggaaaggcgtgaggcatttgccgaa
catttgagcaagatggagtcgcgtccccggcgccagccgaaccgcgaccaggatggcagc
tcagcctcaaggatggaccgcccggcggagggtaagccagcaggtcaggtagagaagcag
agaggtaaaaggggggaatccaggagggaggaagacgaggatgaggatgaggacgaggag
gaggaaagggagaaggagataggaggaggtgatgctgaggagggggagaaagaggagttg
gttaaaatagaagaggtggaggaggaagtgatggaggtgagagaggagggaagcaaggag
gaggcaggagaggagcagaaggagaagagtgagaaggcagcaagtccagagtcagaggag
atggaggtagagaaggaagataagggtaaggaggtagaggtagaaacagacaggaagcag
gagtccacagaaatccaagaagaaaagactccagatgttcagagctgtgaagcagctgta
agcggcctagaggtcccagactccagcgacgagcccccacagagcctcgctgcgggagaa
ccagcagcacagtcacccgtgacggagaccgcctctccaagtcaagaaccccaaaaggcc
tctgctgccctcgctcaggatccaaccagtcccacacaggacaacatggctacagagtcc
agcgtccaggactccacagcggaaaaccagacagaggagagaaaatcaaaggaggacgaa
gaggagggcccacaaaagctgcctgattctaaggaggttgatgcccctgcaaaggaggaa
ggggaggaacaaggcagagggagaaagaaggagaaagacgcaaagaaacatcgcagtcgt
agcaacagctcctcctcttcctcgtctggatcctcctccagcggtagctcttcctcatcc
tccggatccagccgatcctcgtcttcgtcctcatcgtcctcgacgtccagcagccgcagc
cgagacagcgacaagcgaaagaggaggccgtccgatagaggcagagacaagaagaaggag
gaaagaagtcgacagaagtcaggagggagagactcggcggagaggaggaagagaaggagc
gaggagaagaagggcaggccgtcccggagcgatagggagcataaaaatagaggagacagg
aaggacaagagacgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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