KEGG   Xiphophorus couchianus (Monterrey platyfish): 114153970
Entry
114153970         CDS       T05908                                 
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    114153970 (cnot1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xco03019]
    114153970 (cnot1)
Messenger RNA biogenesis [BR:xco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     114153970 (cnot1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     114153970 (cnot1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 114153970
NCBI-ProteinID: XP_027888475
Position
2:complement(7380652..7411643)
AA seq 2405 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFVIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSACDKQTMD
TLTGISALSLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPTTPFGVHSSI
SSQLPGMDSAIGSSIGSSISSSIGSSLGMPSVSSDPFVTRKMSTPVLNPPTFQQSKMKAS
DLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREV
FNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFG
SKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVK
MQGSITTPGSVALAHAQAQSQQPPNLKAPQPGQPSTLATTTTTTTTTAAKTGTISRPTQS
TFKKDMPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKE
TVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSD
KAAANFSDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVA
KVLESSLRSMVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPG
NLLKDKEKLKNLEEQLSAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGP
PTPQFSYHDINVYALAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRS
IKIAMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNS
FAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKH
ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDSKQLAVYEEFARNIPGFLPSNDLSQPT
GFLAQPMKQQAWATDDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARN
SRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQIT
RCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLV
DERSVSHVTEADLFQTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSG
EATNTVTKINLLNKVLGIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVT
FLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVME
GTGAS
NT seq 7218 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttgtgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgcccacctgtttactcaattgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcccgaccttctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggctttcaagacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gagcagattgacgccttccttaagacactttgccgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactccggggagttagctaagaccatcatggagagttctctcgcagacttcattcag
gaagttggttacggcttttgtgccagtcttgatgaatgcagaaacataatccttcagtat
ggggtgagagaggtgacagccagccaggtagccagagttctgggaatgatggcccggacg
cactccggcctgtctgacggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgacggctcgcaggcacatacgtggaatgttgaggtt
ctcattgacattgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacgtacgaa
ctggaccaccccggatttctgatccgagacagcaagggcctgcagatcgtggtgtatggg
atccagcgggggttgggaatggaggtcttccctgttgatctcatttaccgctcatggaaa
cacgcagagggacagctgtcgtttattcagtactctctgatgaacccagaagtgttctgc
tttgctgactacccatgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtctcctcagactc
tctgagcttgggcaatacgaacaggtgaagcagctcttcagcttccccatcaagcactgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttacgccat
gagctcatttccactctcatgcccatctttcttggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctcattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaaactgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggagaaccgttcatccaggcatgtgttacgtttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccggagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacgatcctcaccatggttgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacaggtatcggcatgtgacaaacaaacgatggac
actctgactggcataagcgccttgagtctgggcagcaccgccacctcccacactcagagc
atgcagtgcttcgccacctcactgagctcggctctcagtaaccctctgtccccctcaaag
gccttccctcctcttccaaacccgaacccaaccacaccttttggggttcatagcagtatc
agttcccagcttcctggtatggactctgccatcggctccagcatcggctccagcatcagc
tccagcatcggctccagcctgggaatgccgtcagtcagctcggatcccttcgtcaccagg
aagatgagcacacctgtcctgaaccctcctacctttcagcagagtaagatgaaggcctct
gatctttctcaggtgtggccagaggctaaccagcactttagtaaggagatcgacgacgaa
gcaaacagttacttccagcgtatctacaaccacccacctcacccgaccatgtctgtggac
gaagttctggagatgctacagaggtttaaggactcaaccatcaagcgagaacgagaggtg
ttcaactgcatgcttcgaaacttatttgaggaataccgattcttccctcagtacccggac
aaagaactgcacatcactgcctgcctctttggtggcatcattgagaagggtctggtaacc
tacatggcgctgggtctggccctgcgatacgttctcgaagctttacggaaaccattcgga
tccaaaatgtattactttggaattgctgcactggatagattcaaaaacagacttaaagac
taccctcagtactgtcaacacttggcttcaattgctcactttttgcagtttccacaccat
ttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgtgaccctccggtgaag
atgcagggatccatcactacacctggaagcgtcgccctggcccacgctcaggctcagtcc
cagcagccgcccaacctcaaagccccccagccgggccagcccagtacactggctaccacc
accaccaccacaacgaccactgcagccaaaacaggcaccatctcaaggcccacgcagagc
accttcaagaaggatatgcctccttccataaacactaccaacatcgacacacttctggtg
gcgacggatcaaaccgaacggattgtagaacctccagagaatgtccaagagaagattgct
ttcatcttcaacaacctttctcagtccaacatgacacagaaggtagaggagttgaaggaa
acggtgaaggaagagtttatgccgtgggtgtctcagtacctagtgatgaagcgcgttagc
attgagccaaactttcacagtctctattccaactttttggacacactgaagaacccggag
tttgtcaagatggttctcaatgaaacttacaggaatatcaaggtgcttctaacctctgac
aaagcagctgctaacttctccgatcgctccctgctcaagaaccttggccactggttgggc
atgatcactctggccaaaaacaagccaatcctctacacagacctggagctcaaatctctc
ttgctagaagcctatgtgaaaggccagcaggagctcctctatgtggttccctttgtggcc
aaagtcttggagtctagcctacggagcatggttttcaggcctcagaacccttggactatg
gccatcatgaatgttctcgctgagctccatcaggaacatgacctcaagttgaatttgaag
tttgagattgaagttctgtgcaagaacttgtctctggacatcaacgagctgaagccaggg
aacctgctgaaggacaaagagaagctgaagaacctcgaggagcagctgtctgcaccaaag
aaagaagcgaagcctccagacgaaatcctgccacctcctaccacaggtgactttgttccg
tttccagctccttccacaaccccagctgccaccaccaccacctgcaccaccaccgggccg
cccacgcctcagttcagttaccatgacatcaatgtctacgccctggcaggcctggctcca
catatcaacattaatgtcaacatcgctctgctgcaggctcatcctcagctcaaacagtgc
gtgcgtcagtctgtggagcgagcggtccaggagctggtgcaccccgtggtggaccgttcc
atcaaaatagccatgacaacatgcgagcagatcatcaggaaggactttgccctggattcg
gaggagtctcgcatgcgcgtagccgcccaccacatgatgagaaacctgaccgctggcatg
gccatgatcacctgccgcgagccgctgctgatgagcatcgccaccaatctgaagaacagc
tttgctgcggcgctcagggcaccgacgccacagcagagagaaatgatggaggaggctgca
gccaggattgctcaggataactgtgaactggcctgttgcttcatccagaaaactgctgtg
gagaaagctggacctgaaatggacaagcggctggccacagagtttgagctgaggaagcac
gcacggcaggaaggccgtcgctactgtgaccccgtcgtcctaacctaccaggctgagcgc
atgccggaacagatcagactcaaggtgggaggagtggactctaaacagctggctgtttat
gaagagtttgcgaggaacattcccggtttcttacccagcaacgatctctcccaacccact
ggcttcctggctcaacccatgaagcaacaagcctgggccactgacgacgtggctcagatc
tacgataaatgcatcacagacttggagcagcaccttcatgccattcctccagcgctcgcc
atgaacccgctgacccagggtctgcggaacctgctggaagccgtggctttggcgcgaaac
tccagggatggcattgctgcccttggcctcctgcagaaggccgttgaaggtctcctggac
gccaccagtggtgctgatgctgacctgctgcttcgctacagagagtgccacctgctggtg
ctgaaagctctgcaggatggacgggcctacggaccgcagtggtgcaataagcagattacc
aggtgtctgattgaatgccgggatgaatacaagtataacgtggaagcagtagagcttctg
atcaggaaccatctggtgaacatgcagcagtacgacgtgcacctggcgcagtcgatggaa
aatggactccactacatggcggtcgcatttgccatgcagctggtgaagctgctgctggtg
gacgagcgcagcgtgagccacgtcaccgaggcagacctcttccagaccatcgagattctg
atgagaacctgcgcacactccagagccaacgcaccagaggggcttccccaactgatggat
gtcgttcgctccaattacgaagccatgattgaccgagcacacggagggcccaacttcatg
atgcactctgggatttcccaagcttccgaatacgatgatcctccaggtctgagggagaag
gcagagtacttgctgagagagtgggtcaacctgtatcactcagctgcagctggcagggac
agcaccaaagctttctctgcctttgtcggccagatgcaccagcagggcatactgaagacc
gacgacctgataacgcggttcttccggctgtgcacagaaatgtgcgtggagatcagctat
cgtgcacaggctgaacagcagcacaacccagcagctagcgtagccatcatcagagccaaa
tgttaccacaacctggatgccttcgtccggctcatagccctgctagtgaagcactctgga
gaggccaccaacaccgtgacaaagatcaatctgctcaacaaggttctggggattgttgtc
ggagtgctgatccaggaccacgatgtccgtcacacagacttccagcagctgccgtatcat
cgcatttttatcatgctgctgttggagctcaacgcgcccgaacacgtcctggagaccatc
aacttccagacactcactgccttctgcaacacgttccacatcctgagacccaccaaagct
cccggcttcgtgtacgcctggctggaactgatctcccatcgcatcttcatcgccaggatg
ttggcgcacactccccagcagaagggttggcccatgtacgcacaactgctgattgacctc
tttaagtatctggctcccttcctgaggaacgtagagctcaacaaacctatgcaaatcctc
tacaagggcacactgagggtgcttctggtcctgttgcatgatttcccagagttcctctgt
gattaccattatggcttctgtgatgttatcccacccaactgcatccaactccgcaacctt
atcctcagtgccttcccacgcaacatgaggcttccggatcccttcacacccaacctaaag
gtggacatgctgagcgagataaacatcgctccccgtatcctcaccaacttcacaggcgtc
atgccgtctcagttcaagaaggatctggactcctacctgaagactcgctcacctgtgact
ttcctgtctgagcttcgcagcaacttgcaggtgtcgaacgagccaggaaaccgctacaac
atccagctgatcaacgcattagtgttgtatgtcggcacacaggccatcgctcacatccac
aacaagggcagcaccccgtccatgagcaccatcacacactctgcacacatggacatcttc
cagaacctggctgtggacctggacactgaagggcgatacttgttcctgaacgcgatagcc
aatcagctgcgctacccaaacagccacactcactacttcagctgcaccatgctctacctg
tttgctgaggccaacaccgaggccattcaagagcaaatcaccagggttctgcttgagagg
ctgatcgtcaacagacctcacccctggggactcctcatcaccttcatcgagctgatcaag
aatcctgccttcaagttctggagtcacgactttgttcactgtgcacctgagattgaaaag
ttgttccagtccgtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggag
ggcaccggtgccagctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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