KEGG   Xanthomonas campestris pv. raphani: XCR_0550
Entry
XCR_0550          CDS       T01872                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
xcp  Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:xcp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xcp03032]
    XCR_0550 (topA)
   03400 DNA repair and recombination proteins [BR:xcp03400]
    XCR_0550 (topA)
Enzymes [BR:xcp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     XCR_0550 (topA)
DNA replication proteins [BR:xcp03032]
 Prokaryotic type
  DNA Topoisomerases
   XCR_0550 (topA)
DNA repair and recombination proteins [BR:xcp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      XCR_0550 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 Toprim_2 HC2
Other DBs
NCBI-ProteinID: AEL05470
UniProt: G0CA30
Position
complement(577229..579724)
AA seq 831 aa
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKSADDIYLATDPDREGEAISWHIAEILKERGLLKDKTMQRVVFTEITPR
AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIDAHCRHPSQPFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVARFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVAGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TANLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGSVRVLGADPVSGKE
VSARIGRFGPMVQIGTVEDEDKPTFASLRPGQSIYSISIEDALELFKMPRALGQDKDQDV
SVGIGRFGPFARRGSVYASLKKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLTFEEVQQLLADTGKPVRKGFGAKKATLKKNAVK
DSAKEAKDAAKKTAAVKKVATKTAAKKAPAKKAAKKATKRVVKKAVSKAAG
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgtgacctggttcccaag
gagggcgccgtggatccggacaacgggtttgcgatgcgctacgacttgatcgaaaagaac
gagaagcacgtcgaggcgattgcccgggctgccaagagcgccgacgacatctatctggcg
accgacccggaccgcgagggtgaagcgatcagctggcatatcgccgagatcctgaaagag
cgcgggctgctgaaggacaagacgatgcagcgggtggtcttcaccgagatcacgccccgc
gcgatcaaggaagccatgctcaagccgcgcgcgatcgccgccgatctggtggacgcgcag
caggcacgccgtgcgctggattacctggtcggtttcaacctctcgcctgtgctgtggcgc
aaggtgcagcgcgggctgtcggccggccgcgtgcagtcgccggcgctgcgcatgatcgtc
gaacgcgaggaagagatcgaagccttcatcgcccgcgaatactggtccatcgatgcgcat
tgccggcatccctcgcagccgttcaatgcgcgcctgatcaagctggacgggcagaagttc
gaacaattcaccgtcaccgacggcgataccgccgaggcggcgcgcctgcgcatccagcag
gccgcgcaaggcgtgttgcacgtcaccgatgtggccagcaaggagcgcaagcgccgccct
gccccgccgttcaccacctccacgctgcagcaggaagcctcgcgcaagctcggcttcact
acccgcaagaccatgcaggtggcgcagaaactctatgaaggcgtagcgctcggcgacgaa
ggctcggtcggtctgatcagctatatgcgtaccgactcggtgaacctgtcgcaggacgca
ctggcggaaatccgcgacgtgatcgcgcgcgatttcggcactgcgtcgctaccggatcag
cccaacgcctacaccaccaaatccaagaacgcgcaggaagcgcacgaagcggtgcgcccg
acctcggcattgcgcacgccggcacaggtggcgcgcttcctgtccgatgacgagcgccgt
ttgtatgaattgatctggcgccgcgcagtggcgtgccagatgattccggccacgctcaat
accgtcagcgtggatctgtcggccggcagcgagcacgtgttccgcgccagcggcaccacc
gtggtggtggcgggctttctggccgtgtacgaagaaggcaaggacaccaagagcagcgaa
gacgaggacgaaggccgcaagctgccgctgatgaaggccggcgacaacatcccgctggac
cgcatcgtcaccgatcagcatttcacccagccgccgccgcgcttcaccgaagcggcgctg
gtcaaggcgctggaggagtacggcatcggtcggccgtccacctacgcttcgatcatccag
accctgcagttccgcaagtacgtggaaatggaaggccgcagcttccgcccgaccgacgtg
ggccgtgcggtgtccaagttcctgtccgggcacttcacccgctacgtggactacgacttc
accgccaatctggaagacgatctggatgcggtctcgcgcggcgaagccgagtggatcccg
ttgatggagaagttctggggcccgttcaaggaactggtcgaggacaagaaggattcgctg
gacaagaccgacgccggcagcgtgcgcgtgctcggcgccgacccggtcagcggcaaggaa
gtcagcgcgcgcatcggccgttttgggccgatggtgcagatcggcacggttgaagacgaa
gacaagcccaccttcgcctcgctgcggccgggccagagcatctattcgatctccatcgag
gatgcgctggaacttttcaagatgccgcgcgccctgggtcaggacaaggatcaggacgtc
agcgtcggtatcggccgcttcgggccgttcgcccgccgcggcagcgtgtatgcatcgctg
aagaaagaggacgacccgtacaccatcgacctggcgcgagcggtttttcttatcgaagag
aaggaagagatcgcgcgtaaccgggtgatcaaggaattcgacggcagcgacatccaggtg
ttgaacgggcgctttggcccgtacatcagcgacggcaagctcaacggcaagatccccaag
gaccgcgagcctgcctcgttgaccttcgaggaagtgcagcagctgctggccgataccggc
aagccggtgcgcaagggctttggcgccaagaaggccacgctcaagaagaacgcggtgaag
gattccgccaaggaagccaaggacgcggccaagaagacggccgcggtgaagaaagtcgcc
accaagaccgcggccaagaaggcgcctgcgaagaaggccgccaagaaggcgaccaagcgc
gtggtcaagaaagccgtcagcaaggcggccggctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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