KEGG   Xanthomonas citri pv. citri MN11: J163_01088
Entry
J163_01088        CDS       T03780                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
xcr  Xanthomonas citri pv. citri MN11
Pathway
xcr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    J163_01088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xcr03021]
    J163_01088
   03400 DNA repair and recombination proteins [BR:xcr03400]
    J163_01088
Enzymes [BR:xcr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     J163_01088
Transcription machinery [BR:xcr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     J163_01088
DNA repair and recombination proteins [BR:xcr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      J163_01088
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: AJY98827
UniProt: A0A0U5F9S0
Position
1121573..1125724
AA seq 1383 aa
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG
RILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGANLK
KGDTVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLNDIYNHDNAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEE
NT seq 4152 nt   +upstreamnt  +downstreamnt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggacttcggtaagcagcgc
tcgatcctcgaagtgccgttcctgcttgccatccaggtggattcctatcgcgaattcctg
caggaagacgtggagccgaacaagcgtaaggacctcggtctgcacgcggcattgaagtcg
gtgttcccgatttccagctacagcggcaacgctgcgctggagtacgtcggttacaagttg
ggtcagccggtgtttgacgagcgtgaatgccgtcagcgcggcatgagctatggcgcgccg
ctgcgcgtgaccgtgcgtctggtgatctacgaccgcgagtcgtcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctcggcgaaattccgctgatgaccggcaacggtacc
ttcatcgtcaacggcaccgagcgcgtgatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgatcacgaccgtggcaagacccacagctcgggcaagctgctctacagcgcccgc
atcattccgtaccgcggctcgtggttggacttcgagttcgacccgaaggatgcgctgttc
acccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgtgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggac
gaaggcgtgcagctggagctggtgccggagcgtctgcgtggtgaaacgctgaacttcgac
ctggcagacggcgacaaggtcatcgtggaagcgggcaagcgcatcactgcgcgtcacgtc
aagcaactggaagccgccggcgttgccgcgctggccgtgccggacgactacctggtcggt
cgtatcctgtcgcacgacgtggtcgatggctccaccggcgaactgctggccaatgccaac
gacgaaatcaacgaagaccagctggctgccttccgcaaggcgggcgtcgatgcggtcggc
accctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccttgcgcatcgat
ccgaccaagacgcagctggaagcgctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggaagcggcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgcgtcggccgcaaggacgtg
ctgggcgagtcggtgctttacgacaagaagtactttgccgagcgtaacgacgaagaatcc
aagcgcctggttgccgagcacgccgacacttccgacatcctggaagtgatcaaggtgctc
accgaaatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgtctgtcgatggccgagtccgaaggcctgaccccgcaggagctg
atcaacgccaaaccggtggctgccgcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgcg
ctgggtccaggcggtctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgttcgcccgcaccaaccagtacggcttcctcgagacgccgtaccgt
aaggtgctggacggcaaggtctccgacgacgtcgaatacctgtcggcgatcgaggaaaac
gagtacgtgatcgcccaggcgaacgcgctgaccgatgccaagaacatgctcaccgagcag
ttcgtgccgtgccggttccagggcgaatcgctgttgaagccgccgtccgaagtgcacttc
atggacgtctcgccgatgcagaccgtgtcggtcgcagcggcgctggtgccgttcctcgag
cacgacgacgccaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccgaca
ctgcgttcgcagaagccgctggtcggtaccggcatcgagcgtgcggttgcgcgcgactcg
ggcgtgaccgtcaatgcgctgcgtggtggcgtgatcgagcagatcgacgcagcccgcatc
gtggtcaaggtcaacgaggcagaaatcggcggcggcaccgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aatgtgggcgacgtgatcgcgcgcggcgacgtgctggcagacggcccgtccaccgacatc
ggcgaactggcgctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgttgcgcgcgacaccaaattggggccggaggaaatttcc
gccgacatcccgaacgtgtccgagcaggccttgaaccgtctggatgaaagcggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gaaagccagctgactccggaagaaaagctgctgcgtgcgatcttcggcgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgtgcgcgtcagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcgcgtctgcgctcgcagatcgtgggtaaggtcgccaacggcggcgccaacctgaag
aagggcgacaccgtcaccgacgcgtacctggacgggctgaagaagtccgattggttccag
ctgcgcatgaaggacgaagacgctgccgacgccatcgagcgtgcgcagaagcagatccag
gcgcacgagaaggaattcgaagcacgttttgccgacaagcgcggcaagatcacccagggc
gacgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcgggccgccacggcaacaagggtgtggtctccaacgtg
gtgcccgtggaagacatgccgtacatggccaccggcgagtcggtcgacatcgtgttgaac
ccgctcggcgtgccgtcgcgcatgaacatcggccagattctggaagtgcatctgggttgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaggccgccgtcagc
gaactgcgcaagttcctcaacgacatctacaaccacgacaacgcgatcaatgcacagcgc
gtggacctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgac
ggcgtgccgatggcgaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggagctggccgatctgccgcagagcggtcagacccagctgtacgacggtcgcactggc
gaagcgttcgatcgcaagaccacggtcggctacatgcattacctgaagttgaaccacttg
gtcgacgacaagatgcatgcgcgctcgactggcccgtactcgctggtgacccagcagccg
ctgggcggcaaggcgcagttcggtggtcagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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