KEGG   Xanthomonas cucurbitae: EBN15_06905
Entry
EBN15_06905       CDS       T06553                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xcz  Xanthomonas cucurbitae
Pathway
xcz03030  DNA replication
xcz03410  Base excision repair
xcz03420  Nucleotide excision repair
xcz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xcz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EBN15_06905 (ligA)
   03410 Base excision repair
    EBN15_06905 (ligA)
   03420 Nucleotide excision repair
    EBN15_06905 (ligA)
   03430 Mismatch repair
    EBN15_06905 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xcz03032]
    EBN15_06905 (ligA)
   03400 DNA repair and recombination proteins [BR:xcz03400]
    EBN15_06905 (ligA)
Enzymes [BR:xcz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EBN15_06905 (ligA)
DNA replication proteins [BR:xcz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EBN15_06905 (ligA)
DNA repair and recombination proteins [BR:xcz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EBN15_06905 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EBN15_06905 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EBN15_06905 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EBN15_06905 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 PTCB-BRCT
Other DBs
NCBI-ProteinID: QHG86771
UniProt: A0A2S7DYE1
Position
1590908..1593409
AA seq 833 aa
MTASPDPAQRIDALRRRIDDANYRYHVLDEPQMADVDYDRLMRELEVLEAEHPALASADS
PTQRVGYLAASRFAEVRHALPMLSLGNAFSDEEVSEFVRRISERLEVRQPVFCAEPKLDG
LAISLRYEDGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGQGWPKVLEVRGEVYMPR
AAFETYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVRDGTLPQT
HSAILAQLREWGFPVSQLVEVVQGSEELLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLTPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVAEQRPAGTQQWRMPTQCPVCGSEIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVQGVADLYLLT
VDQLLQLRLISTADSPYAFLREAREHLASGAYAQLEATVASIGVDLAGEREAPPTWQADL
LRAGLPGFDWNRRKIATKWAENLIEAIEKSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQPGNQQAIDDLLARKVRIGDTHPPSPKL
RGELSFANVLDDMDIPKVTPVRAQQLAAAVSSFDALRTAGADALQQAGVPAPVVAALLQW
LDRPENAALAAAAQCAMDTLLARLPQADAVQAGPLDGQTVVITGTLAALTRDGAKQRLEA
LGAKVAGSVSKKTAFLVAGEDAGSKLDKAQSLGVEIWEEARLLAFLGEHGQQP
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgactgccagcccggatcccgcccagcgcatcgatgccctgcgccgtcgcatcgacgac
gcgaactaccgctatcacgtgcttgacgagccgcagatggccgacgtggattacgaccgc
ctgatgcgcgagctggaggtgctggaggccgagcatccggcgctggccagcgccgattcg
ccgacccagcgcgtgggctacctggccgcatcgcgctttgccgaggtgcggcatgcgctg
ccgatgttgtcgctgggcaatgccttcagcgacgaagaagtgagcgaattcgtgcgccgc
atcagcgaacggttggaggtcaggcagccggtgttctgcgccgagcccaagctcgacggc
ctggccatcagcctgcgctacgaagacggcgagttcgtgcagggtgccacccgcggcgac
ggtgccaccggtgaggatgtcagcgcgaatctgcgcacggtcaaggcaattccgctgcgc
ctgcgcgggcagggctggccgaaggtgctggaggtgcgcggcgaggtctacatgccgcgc
gcggcctttgaaacctacaacgcgcagatgcgcgcacagggcggcaaggtgctggccaat
ccgcgcaatggtgcggccggctcgctgcgtcagctggatgcgcgcatcaccgcgcagcgc
ccgttgagcttcttcgcctacggcgtgggcgaggtacgcgacgggacgctgccgcagacg
cattcggccatcctggcgcagttgcgcgaatggggctttccggtcagccagctggtcgag
gtggtgcagggcagcgaagagttgttggcgtattaccagcgcatcggcgccgcgcgcgac
gggctggccttcgatatcgacggggtggtctacaagctcgacgatctggccggtcagcgc
gaaatgggctttgtctcgcgagcgccacgctgggcgattgcgcacaagttccccgcgcag
gagcagtccaccacggtagaggcgatcgagatccagatcggccggaccggtgcggccacg
ccggtggcgcgtctcacgccagtgcatgtggccggggtgatcgtcaccaacgcgaccctg
cacaacgccgaccagatcgcgcggcttgacgtgcgcgtgggcgacacggtgatcgtacgg
cgggccggcgatgtgattccggaggtggccggcgtggtggccgagcagcgcccggcgggc
acgcagcaatggcgcatgcccacccaatgcccggtgtgcggttcggagatcgtgcgcgag
gagggccaggcggtgtggcggtgctcgggcgagttgacctgcccggcgcagcgcaaggag
gcgttccggcatttcgtctcgcggcgtgcgatggatgtcgacggcctgggcgagaaattc
atcgaggtgctggtcgatagcggactggtgcagggtgtggccgatctgtatctgctcact
gtcgatcaactgttgcagttgcgcctgatcagcaccgccgacagtccgtacgcgttcctg
cgcgaggcgcgcgagcatctggccagtggcgcgtatgcgcagctggaagccaccgtggcc
agcatcggtgtggatctggccggcgaacgcgaagccccgcccacctggcaggccgatctg
ctacgcgcagggctgcctggcttcgactggaaccgccgcaagatcgccaccaagtgggcc
gagaacctgatcgaggcgatcgagaaatcgcgcgacaccacgctggagcgcttcctgttc
gcactgggtatcgagcatgtgggcgaaagcaccgccaaggccttgtcggcgtggttcggc
gatctggaactgattcgccacttgccgtggccgctgttcaaacgggtgcccgatatcggc
ggcgaagtggcgcgctcgctcggccatttcttcgatcaacctgggaatcagcaggccatc
gatgatctgctggcgcgcaaggtgcgcatcggcgacacccatccgccctcgccgaagcta
cgtggcgagctgagctttgccaacgtgctggacgacatggacatccccaaagtgacgccg
gtgcgcgcgcagcaattggcggctgcggtgtcctcgttcgatgccttgcgcactgcaggc
gccgatgccttgcagcaggccggcgtgccggcgccggtggtggctgcgctgctgcaatgg
ctggatcgcccggaaaatgccgccctggcggctgctgcgcaatgcgcgatggacacgctg
ctggcgcgtctgccacaggccgatgctgtacaggccgggccgctcgacggccagaccgtg
gtcatcacgggaacgttggcggcattgacccgcgatggcgccaagcagcgactcgaagca
ctcggtgccaaggtcgccggcagcgtatcgaagaagaccgcgtttctggtagcgggcgag
gacgccggttccaagctggacaaggcgcagtcgttgggcgtggaaatctgggaggaagcg
cgtctgctggccttcctgggcgaacacgggcaacagccatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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