KEGG   Xanthomonas fragariae: BER92_11170
Entry
BER92_11170       CDS       T04667                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
xfr  Xanthomonas fragariae
Pathway
xfr02024  Quorum sensing
xfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BER92_11170
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BER92_11170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xfr03019]
    BER92_11170
   03036 Chromosome and associated proteins [BR:xfr03036]
    BER92_11170
Messenger RNA biogenesis [BR:xfr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BER92_11170
Chromosome and associated proteins [BR:xfr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BER92_11170
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AOD16598
UniProt: A0A1Y6H880
Position
complement(2467835..2468113)
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGQGGGYVQSNEGNQAEDDDVEQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaggacccattcctcaatgcgctgcggcgcgagcgggtc
ccggtttctgtgtatctggtcaacggcatcaagctgcagggcacgatcgagtcgttcgac
caattcgtggtcctgctgcgcaataccgtgagtcagatggtttacaagcacgccatctcc
acggtcgtgccggcgcgcaatgtgcgggtggggcaaggtggcgggtatgtgcaatccaat
gaaggcaatcaggcggaagatgacgacgtcgagcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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