KEGG   Xanthomonas fragariae: BER92_19190
Entry
BER92_19190       CDS       T04667                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
xfr  Xanthomonas fragariae
Pathway
xfr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BER92_19190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xfr03400]
    BER92_19190
Enzymes [BR:xfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     BER92_19190
DNA repair and recombination proteins [BR:xfr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BER92_19190
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_30 AAA_22
Other DBs
NCBI-ProteinID: AOD16396
UniProt: A0A1Y6HNW0
Position
complement(4200022..4203891)
AA seq 1289 aa
MSVIAVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAATLVPDASSASVGAAPGSLRPLAATELAAATSTDDPSRPIIQDHL
APAQQDAPDATLTRAILAAHLTNGTETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLRE
HALESGQALAAPELLANDRQLLGEVAADLWRQRAADAVMAEDLIALWSGGPEALASDLRA
LVRHPTLLPGVATTTDNSAALLQAVQDASAALAAAFQAHGTAFFEAIMSAIDGGILSKVS
YKPDWLASLWHWFERFAAAPSIGTAPHAKLLKLTAAELASGTNKKFVDRTPASPMSHEID
SYLTALARVEEWRTRRRIRLLHALRDDAIARLALLKRQRRVQTYDDLVNGVAQALQGAQA
DGLLKRLRAQYAIALVDEFQDTDDRQWSIFSNVFGEGPLARAAELAPALFLIGDPKQAIY
GFRGGDVRAYLDAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGFTDAFLTDGIAFHPV
QAGTKRLDTDLQREGATAPALTLWRAPEPPPPAAPAAKNKPAGKPKPWSAVRARELSTAA
CVAAIRGWLADGRDAIATICGRPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVAAGKQS
LFATDEALELLALLRALLDPGDDSRLRAALATVLIGEDAIAIAALEHDGERYRRWQQLAL
DWRERWQRGGPLALIGDLGAAHGQRLLALVDGERRLTNYLQLAELLQEADARALGPHGLV
DWLARRIANADENDETQQLRLESDVRRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGR
HCVVHAPGRGRQLHWKTDKDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGP
FHQHERTALSGMLGALDALQGAVVVDTATPPTNLPRLPPPDEAQVPPARTPQRHIAPEWW
VYSFTQLANADTGAATDPMASATVVGSGGSDEPSSSEAIAVATEVDAFDPRFAGNRFGVV
MHEVFERCDFAAWHAWQPGQPAPQGQAAAILEALQRGGYAHNEWDDGLAMLTALIGHTLT
VTLPEGTHLAAVPEPQRRNEMEFHFAMRPTRVDVLLALLHRFGVVGDRQAFGARHRLEGL
MTGLIDLTYTIDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTLALHRWLRFR
LGNSYDYARDFGGVRYLFCRGLDATRSSVSGTPGPGIYAWRFDPALVDALDALFAGTPTE
HRSNDGAEPLSPRGRSCGEGASAMATRTP
NT seq 3870 nt   +upstreamnt  +downstreamnt
atgagcgtcatcgccgtaaccgacccgtacctgcaattgccgctgcatggcgttcgcctg
atcgaggccagtgccggcaccggcaagaccttcactctggccacgctgttcacccgtctg
gtggtcgagcgcggtttgcgcatcgggcagattctcgcggtcacttttaccgaagccgca
acgcaggaattgcgccgccgtatccgtgagcgcctcgtcctggccgcaacgttggtgccc
gatgcctcatcggcttctgtaggagcggccccgggtagccttcggccattggcagcaacc
gaactggccgcggccacgagcaccgatgacccgtcgcggccaataatccaagaccacctg
gcgccagcgcaacaagacgcgcccgacgccaccctcacccgcgccattctcgccgcgcat
ctgaccaacggcactgaaaccccggccgccttgcgccgccgcctgcaacaggcagtggaa
gaaatcgacctggctgcggtcttcaccatccacggcttctgcgcgcgcgtgctgcgcgaa
cacgccttggaaagcggccaggccctcgccgcgccggaactgctcgccaacgaccgccaa
ttgctgggcgaagtcgccgccgatctatggcgccagcgggccgccgatgcggtgatggcc
gaagacctgatcgcgctgtggtcgggcggccccgaggcattggccagcgatctgcgcgcc
ttggtgcgtcatccaacgctgttgccgggggtggcaacgactaccgacaattccgccgcg
ctgctacaggccgtgcaagatgccagcgccgcattggccgccgcgttccaggcgcacggc
accgccttcttcgaagccatcatgtccgccatcgatggcggcatcttgagcaaggtcagc
tataagcccgactggttggcatcgctgtggcattggttcgaacgtttcgccgccgcgcca
tcgatcggcaccgcgccccatgccaagttgctcaagttgaccgctgcggaactggcatcg
ggcaccaacaagaagttcgtcgaccgcacaccggcctcgccgatgagccacgagatagac
agctatctcaccgcgctggcacgcgtcgaagaatggcgcacccgtcgccgcattcgcctg
ctgcacgccctgcgcgacgacgccatcgcacggctcgctttgctcaagcgccagcgccgc
gtgcaaacctatgacgatctggtcaatggcgtcgcacaggcgttgcaaggcgcgcaggcc
gacggactgctcaaacgcctgcgcgcgcagtacgccatcgcgttggtggacgaattccag
gacaccgacgaccgccagtggtcgatcttctccaacgtgttcggcgaaggcccactcgca
cgcgcggccgaacttgcgccggcgctgtttttgatcggcgaccccaagcaggccatctac
ggcttccgcggcggcgacgtgcgcgcgtatctggatgccgcggtcaccgctgaacttgcc
ccgccgctgagccacaatttccgctcgcgccccggcgtgttggcggccatcgacgcgctg
tacgcgcaggccggcttcaccgacgccttcctcaccgacggcatcgctttccatccggtg
caggctggtaccaagcggctggacaccgacctgcaacgcgaaggcgccaccgccccggca
ttgacgttgtggcgcgcgcccgaaccaccgccgcctgccgcgccagcggcgaagaacaag
cccgcaggcaagcccaaaccctggagcgccgtccgcgcccgtgagctgtccaccgccgcc
tgcgttgcggcgattcgcggctggctggccgatggccgcgacgccatcgccacgatctgt
ggccgcccggtgcaggccggcgacatcgccgtactggtgcgcagccacggcgaggccacg
cgtatccaacaggcgctgggcgcggtaggcattccggcagtcgccgccggcaagcaaagc
ctgttcgccaccgacgaagcgctggagctgctggccctgctgcgggccttgctcgatcca
ggcgacgacagccgcctgcgcgccgcactggccacggtgctgatcggcgaagacgcgatc
gccatcgccgcactcgaacacgacggcgaacgttatcgccgatggcagcagctggcactg
gactggcgcgaacgctggcaacgtggcggcccgctggcgctgatcggcgacctcggcgcc
gcgcacgggcaacgcctgctcgcactggttgatggcgagcgtcgcctcaccaattacctg
caactggccgaactgctgcaggaagccgacgcccgcgcactcggcccgcacggcctggtc
gactggctggcccgccgcatcgccaacgccgacgaaaacgacgaaacccagcaactgcgg
ctggaatcggacgtgcgccgtgtgcagatcgtcaccctgcacaagagcaagggcctggaa
tatccgctggtgtttctgccgtatatcggtatcggccgcagcgacaagggcgctggccgc
cattgcgtggtgcacgcgccgggtcgcggccgtcagctgcattggaagacagataaggac
gaccccacctggagcgctgccgaagcggcctggaagcaggaacaacgcgccgaagacgca
cgcctgctctacgtcggcctgacccgcgccgagcacgcgctgtggatcgccagcggccca
ttccaccagcacgaacgcaccgccttgtccggcatgttgggtgcactcgatgcgctgcag
ggcgcagtagtggtggataccgccacgccgccaaccaacctgccacgcctgccgccgccg
gacgaggcgcaggtgccgcccgcccgcaccccgcagcgccatatcgcgcccgagtggtgg
gtctacagtttcacccaattggccaacgccgataccggcgccgccaccgacccgatggcc
agcgccaccgtcgtcggcagcggcggcagcgacgaaccgtccagcagcgaggcgatagcg
gtagccaccgaggtcgacgccttcgacccgcgctttgccggcaatcgcttcggcgtggtg
atgcacgaggtgttcgagcgctgcgacttcgccgcctggcatgcctggcagccaggccaa
cccgcaccccagggccaggccgccgccatcctcgaagccctgcaacgcggtggctacgcc
cataacgaatgggacgatggcctggccatgctcaccgccctgatcggccacaccctcacc
gtcaccctgccggaaggcacccatctggccgccgtgccggagccgcagcgccgcaacgaa
atggaattccatttcgccatgcgacctacccgcgtcgatgtattgctcgcactgctgcat
cgctttggtgtggtcggcgaccgccaggcctttggcgcacgccaccgcttggagggcctg
atgaccggcctgatcgaccttacctacaccatcgacggccgctggtacgtgctcgactac
aaatccaaccgtctgcccagctacgacgccgacgccctggcccgcgccatggcgcacagt
gaatatgagttgcaggcgctgatctacaccctcgccctgcatcgctggctccgcttccgc
ctgggcaattcctacgactacgcccgcgacttcggcggcgtgcgctacctgttctgccgt
ggcctggacgctacccgctcatccgtctccggcacgcctgggcccggcatctacgcctgg
cgcttcgacccagccctggtggacgccctggacgcgctgttcgccggcacgcccacagag
caccgttctaacgatggggcagagcccctctccccccgggggaggagctgtggtgagggc
gcgtccgccatggcaactcgcactccatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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