KEGG   Xanthomonas citri pv. fuscans: XFF4834R_chr39790
Entry
XFF4834R_chr39790 CDS       T03094                                 
Symbol
polA
Name
(GenBank) probable DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
xfu  Xanthomonas citri pv. fuscans
Pathway
xfu03030  DNA replication
xfu03410  Base excision repair
xfu03420  Nucleotide excision repair
xfu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xfu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XFF4834R_chr39790 (polA)
   03410 Base excision repair
    XFF4834R_chr39790 (polA)
   03420 Nucleotide excision repair
    XFF4834R_chr39790 (polA)
   03440 Homologous recombination
    XFF4834R_chr39790 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xfu03032]
    XFF4834R_chr39790 (polA)
   03400 DNA repair and recombination proteins [BR:xfu03400]
    XFF4834R_chr39790 (polA)
Enzymes [BR:xfu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     XFF4834R_chr39790 (polA)
DNA replication proteins [BR:xfu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     XFF4834R_chr39790 (polA)
DNA repair and recombination proteins [BR:xfu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     XFF4834R_chr39790 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XFF4834R_chr39790 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc Glyco_hydro_32C
Other DBs
NCBI-ProteinID: CDF63381
Position
complement(4581890..4584694)
AA seq 934 aa
MSRLVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERPAYIAFVVDAPG
KTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGA
ADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRALVTI
KTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPVALGAAA
AAARTEPGRARGTGFVSGPVNAAVDVDPSLSAPGQYDTILTQEQLDSWIARLRAAGQFAF
DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQLAPLLTDPAV
RKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYE
DVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLV
DVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDEL
KLPAVVKTPKGQPSTNEEALEAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGR
VHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIM
AHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLA
RQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQG
QRAGAERAAINAPMQGTAADIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVD
TLLSEVTTRMAGAAELRVPLVVDSGVGDNWDQAH
NT seq 2805 nt   +upstreamnt  +downstreamnt
atgagcagattagtcctgatcgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaatgcgcagggcgagcccaccggcgccttgttcggcgtggtcaacatg
ctgcgcgccaccttgaaggagcgcccggcctacatcgccttcgtggtggatgcgcccggt
aaaaccttccgcgatgacttgtatgccgactacaaggccaaccgaccgtcgatgcccgac
gacctgcgcgcgcaggtgcagccgatgtgcgacatcgtgcatgcgctgggcatcgacatc
ctgcgtatcgacggcgtggaagccgacgatgtgatcggcacgctggccctgcagggcgcc
gccgatggcctggccgtcaccatctccaccggcgacaaggacttcgcccagctggtgcgc
ccgggcatcgaactggtcaacaccatgagcggcagccgcatggattcggacgcggcggtg
gtcgccaagttcggcgtgcggcccgagcagatcgtcgacctgctggcgctgatgggggac
accgtcgacaacgtgcccggcgtggaaaagtgcggccccaagaccgccgccaaatggctg
gccgaatacgactcgctcgatggcgtcatcgccaatgccgacaagatcaagggcaagatc
ggcgacaacctgcgcgccgcgttgccacggctgccgctcaaccgcgcgctggtcaccatc
aagaccgatgtcaccctggccagcggcccgcgcgcgctggacctgcgcgagcccaacgcc
gaggcgctggcggtgctgtacgcccgctacggtttcacccaggcgctgcgcgaactcggt
ggtgcggccgccgcccaggcgggcctgctggccgagccggtggcgctgggcgctgctgct
gccgctgcgcgcaccgagccgggccgcgcgcgcggcaccggcttcgtctccggccccgtc
aacgccgcggtggatgtggatccgtcgctgtcggcgcccggccagtacgacaccatcctg
acccaggagcagctcgacagctggatcgcgcggctgcgtgccgccggccagttcgccttc
gataccgaaaccgacagcctggacccgctgcaagccgatttgatcggcctgagcgtggcc
gccgagcccggccaggcggcgtacctgccgttcggccacaacttccccggtgccccggtc
cagctcgaccgcacccaggcgctggcgcaactggccccgctgctgaccgaccctgcggtg
cgcaagctcggccagcacggcaagtacgacctgcacgtgatgcgccggcatggcgtggag
ctggccggctacgccgacgacaccttgctggagagcttcgtgctcaattccggcagcgcc
cgccacgacatggacagcctggccaagcgctatctcggctacgacaccgtcaagtacgaa
gacgtctgcggcaagggcgcaaagcagatcccgttcgcccagatcagcctggaagatgcc
acccgctacgccgccgaagacgccgacatcaccttgcgcctgcatcgcgtgctcggcccc
cgcctgaccagcgaaccgggcctggagcgcgtctaccgcgacatcgaaatgccgctggtg
gacgtgctggcccgcatcgaagccaacggagtgtgcgtggatgcggccgaactgcgccgc
cagagcgcggacctgtccaagcgcatgctcgccgcccagcagaaagccaccgagctggcc
gggcgcaccttcaacctggattcgcccaagcagctgcaggccctgctgttcgacgagctc
aagctccctgccgtggtcaagacgcccaagggtcagccctcgaccaacgaagaggcgctg
gaagccatcgccgaccagcacgagctgccgcgggtcatcctggaataccgtggactgacc
aagctgcgcagcacctacaccgacaagctgccggagatgatccacccgcagtccgggcgc
gtgcacaccagctaccaccaggccggtgccgccaccgggcggctgtcctcctcggatccg
aacctgcagaacatcccgatccgcaccgaagacggccgccgcattcgccgcgccttcgtc
gcaccgcccggacgcaagctgatcgcctgcgactattcgcagatcgagctgcgcatcatg
gcgcacctgtccggcgaccccgggctggtgggtgcgttcgagtccggcgccgacgtgcat
cgcgccacggccgccgaagtattcggccgcaccatcgacaccgtcagcgctgacgaacgc
cgcgctgccaaggcgatcaacttcggcctgatgtatggcatgagcgcctttggcctggcc
cgccagctcggtatcggccgcggcgaggcgcaggattacattgcgctgtacttcagccgt
tacccgggcgtgcgcgacttcatggaaaccacccgccagcaggcgcgcgacaagggctat
gtggaaaccgtgttcggccgcaggttgtacctggatttcatcaatgccggcagtcagggc
cagcgtgccggtgccgagcgcgccgccatcaacgcgccgatgcagggcaccgctgcggac
atcatcaagcgcgcgatggtcaacgtggatggctggatcgccgaccacgcgcaacgcgcg
aagatgattttgcaggtgcacgacgaactggtgttcgaagccgacgtcgatttcgtcgac
acgctgctgagcgaggtcaccacgcgcatggcgggcgctgctgaattacgcgtgccgctg
gtggtcgattcgggcgttggcgataattgggaccaggcgcattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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