KEGG   Xanthomonas hortorum pv. gardneri: BI317_00950
Entry
BI317_00950       CDS       T04668                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xga  Xanthomonas hortorum pv. gardneri
Pathway
xga03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BI317_00950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xga03400]
    BI317_00950
Enzymes [BR:xga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BI317_00950
DNA repair and recombination proteins [BR:xga03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BI317_00950
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme CNDH2_M
Other DBs
NCBI-ProteinID: APP82971
Position
214576..217350
AA seq 924 aa
MSLHDYNAKRRFDQTPEPAGETPARASKQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYASFEGDIPQGHYGAGHVDVFDHGHWHCEGDALAALDA
GKLEFELQGTLLRGGFALVRTQMRGGKPQWLLFKRTDAYATDLDADALVAQQAAGSSDVA
TSATRAKTASVTTRGKTSRAQRVPPDAIAETSTVTSKRVRSGRAGSKQWRTRALALDGAR
DTPCPTELRAQLTLLREQAPEGERWLHEIKWDGYRLLADMVDGNVQLRSRNDQAWTQRFP
EVVRALQALPVRDARLDGELVVLDAQGRSDFSALQRALDGSVTQPLRYIVFDLLGVAGVD
LRGTPLLQRKQLLRELLGDQPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLAEARYRE
GRSADWVKTKHANSDEFVVVGYTDPKGARSGFGALLMAQRDGKTLRYVGRVGTGFDDALL
GKITTLLQALHSETATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRL
REDKPMSELGGDRAVPGKPRAANRSGDATRAIAPARKTATKKAAKTTAEPSTRTASKRVR
STASKTTAISKTAASKSRASKSAASKSTASKSTSTDGINITHPERVVFPAVGISKGDVAD
YYRAVAPLVLAEIARRPLSLLRCPDGTGGECFFQKHEGRHLGAHIKAIALKQKSGTEDYI
YVEDAAGLLELVQMNTLELHPWGAQIEDPEHPDRLVFDLDPGDDVSWPDVVAAARDIRAK
LRSAGLESAVRLSGGKGLHMVVPIVPEAGWEQARDFCEAFAQALATHTPDRYVATMSKAK
RHGVIFVDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALQRAK
RQRADPWESVLALQQYLPTGDDHN
NT seq 2775 nt   +upstreamnt  +downstreamnt
atgtcactgcacgactacaacgccaagcgccgcttcgaccagacaccggaaccggccggc
gagacgcctgcgcgcgccagcaagcagccgattttcgtggtgcagctgcaccacgccagc
tcgcgccattacgacttccgtctggaagccgatggcgtgctcaagagttgggccgtgccg
aagggtccgtcgttgcgcgttggcgaaaaacgccttgcggtgcaggtggaagatcatccg
ttgtcgtacgccagtttcgaaggcgatatcccgcaagggcattacggcgcaggccatgtg
gatgtgttcgaccacggccattggcactgcgaaggcgatgcgttggccgcgctggacgcg
ggcaagctggaattcgagttgcagggcacgctgctgcgcggtggctttgcgttggtgcgc
acgcagatgcgtggcggcaaaccgcagtggctgctgttcaagcgcaccgatgcctacgcg
accgatctggatgccgatgcactggtggcgcagcaggccgccggttcatcggatgtggca
acttcggcaacgcgtgccaagacagcatcggttacaacgcgcggcaagactagccgtgcg
caacgtgtgccgccagacgcaatcgccgagacatcgacagtgacaagcaaacgtgtgcgc
tcagggcgtgcagggtccaaacagtggcgtacccgcgcactggcgctggatggcgcgcgc
gatacgccatgcccaaccgagctgcgcgcgcaactgaccttgctgcgcgagcaggcgccg
gagggcgagcgctggctgcacgagatcaagtgggacggctatcgcctgctggccgatatg
gtcgatggcaacgtgcagttgcgctcacgcaacgaccaggcctggacgcagcgcttcccg
gaggtggtgcgcgcgttgcaggcgttgccggtgcgcgatgcgcgcctggatggcgagctg
gtggtgctggacgcgcaagggcgcagtgatttctcggcgctgcaacgcgcgctcgatggc
agcgtcacgcagccgctgcgctatatcgtgttcgacctgctcggggtcgccggggtggat
ctgcgcggcaccccgttgctgcaacgcaagcaattgctgcgcgagttgctgggcgatcaa
ccgggcacgctggcatttagcgaccatgtgatcggtcacggcccggaagtgttcgcggcc
agtgccggcaccggctgggaaggcatcgtcagcaagctggctgaagcgcgttatcgcgaa
ggacgcagcgccgattgggtcaagaccaagcacgcaaacagcgacgagttcgtggtggtg
ggctacaccgaccccaagggcgcacgcagtggttttggcgcattgctgatggcgcaacgc
gacggcaagacgctgcgctatgtcgggcgtgtaggcaccggtttcgacgatgccttgctc
ggcaagatcaccacactgttgcaggcgctgcatagcgagactgccacgctggaattgccc
acgcatatccctgggcggccacgcgatgtgcattgggtgcgaccggtgttgatcgccgag
gttgcctttcgcggttgggccaaggaagggctgctgcggcaagccgcgttcaagcgtttg
cgtgaggacaaacccatgagcgagttgggcggcgatcgcgccgtgccgggcaagccgcgt
gctgcgaatagaagtggggatgcgacgagggccattgcgcctgcgcgcaagaccgcgaca
aagaaagcagccaaaacgacagccgaaccatccaccaggactgccagcaaacgcgtgcgt
tcgacggcatcgaagacgaccgctatatcgaagactgcagcgtccaaatccagggcatcg
aaatccgcagcgtccaagtccaccgcgtctaagtccacgtccacagacggcatcaacatc
actcatcccgagcgcgtagtgtttcctgcggtcggtatcagcaagggcgatgtggctgac
tactaccgcgcagtggcgcccctggtgctggcggaaatcgcacgccgcccgttatcgctg
ttgcgctgccccgacggcaccggcggcgagtgcttcttccagaagcacgaaggtcgccat
ctgggcgcgcatatcaaggcgattgcgctaaagcaaaaaagcggcaccgaggactacatc
tatgtcgaagatgccgccggcctgcttgagctggtgcagatgaacacgctggagttacat
ccctggggcgcgcaaatcgaagacccggagcatccggatcgcctggtgttcgatctggat
cccggcgacgacgtgtcctggcccgatgtggtcgccgccgcgcgcgacatccgcgccaag
ctgcgcagtgcagggctggaaagcgcggtgcgcctgtccggaggcaagggcctgcacatg
gtggtgccgatcgtgccggaggcgggttgggagcaagcgcgcgatttttgcgaagcgttc
gcacaggcactggcaacgcacaccccggaccgctacgtggcgaccatgagcaaggccaag
cgccacggcgtgatcttcgtcgactggctgcgcaacggacgcggcaataccagtgtgtgt
tcgtggtcgctacgcgcccgcgaaaaagccaccgtcgccgtgccgctgcgctgggaagaa
ctcggcaagatcagcggcccggatgcgtttccgatggacaaggcattgcaacgtgccaag
cgccaacgcgcagatccatgggaatcggtgctggcgttgcagcaatacttgcccacgggc
gacgatcataactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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