KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00004
Entry
AMD24_00004       CDS       T04108                                 
Symbol
dnaX_1
Name
(GenBank) DNA polymerase III subunit tau
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03030  DNA replication
xii03430  Mismatch repair
xii03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AMD24_00004 (dnaX_1)
   03430 Mismatch repair
    AMD24_00004 (dnaX_1)
   03440 Homologous recombination
    AMD24_00004 (dnaX_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xii03032]
    AMD24_00004 (dnaX_1)
   03400 DNA repair and recombination proteins [BR:xii03400]
    AMD24_00004 (dnaX_1)
Enzymes [BR:xii01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AMD24_00004 (dnaX_1)
DNA replication proteins [BR:xii03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     AMD24_00004 (dnaX_1)
DNA repair and recombination proteins [BR:xii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     AMD24_00004 (dnaX_1)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA AAA_5 AAA_18 TniB AAA_22 Sigma54_activat
Other DBs
NCBI-ProteinID: ALJ56208
UniProt: A0A0P0FQ24
Position
6604..7623
AA seq 339 aa
MALSVKEALEYLTASHKAHRLAHAYLICGTTGSGKEELARKFAALTLHCSEEVLSSCPPH
PDFHRVQPVSKSRRIVIEQVRLLEQILRRSATRTAKIAVIQEADRFALNAANAFLKTLEE
PPTGTYLILLTTNPEVVLPAILSRCIRISLRQKEKWQPTQQERSIVAHFNHCLQLSVGTV
AQTFQFVRGFQTVLAECKEDASRQAAAELEHCRQHYQNRTDGTWFAERARHSKAMMESVS
IHLRHGLITAVKSFLVEGLRVFHLGTTSPDPGVAFLSKVPQETLLQQIELLDRLQCFLAS
GVNESLALEVFFLEIFSLILRGDFESDGELTSELPLLPS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggccctttcagttaaagaggccttggagtacttgactgcctcgcacaaggcacatcgc
cttgctcatgcctatttaatctgtggtaccactggttccgggaaagaagaattggccaga
aaatttgctgcacttaccttgcattgctcagaggaggtacttagctcttgccccccgcat
ccggattttcacagagtgcagccagtttctaaatctagacgtattgttattgaacaggtg
cggcttttagaacaaattctccggcggtctgctactaggaccgctaagatcgcagtgatc
caagaggcggaccgttttgctctcaatgctgccaatgcttttctaaaaactctggaggaa
ccgcctacagggacctatctaatacttctcactactaatccagaagttgtcttgccggcc
attctttcgaggtgtattcgcatatctctgcgtcagaaagaaaaatggcaacctacccag
caagagaggtccattgtagctcattttaatcactgcctgcaacttagtgtggggacagtt
gctcaaacattccagtttgtaaggggttttcaaaccgtattagctgagtgcaaagaagat
gcctccaggcaagccgcagcagaactcgagcactgcaggcagcactatcaaaataggact
gatggcacgtggtttgcggaacgtgcaaggcactcgaaagccatgatggaatctgtttcc
atccatctccgccatggcttaattacagctgtgaagagttttcttgtagaagggctacgc
gtcttccaccttggaactacttctcctgatccaggagttgcctttttatctaaagttcct
caagagactctcctccagcaaatagaattgctggaccgtctccagtgtttcctggccagt
ggggtcaacgagtctctcgctcttgaggttttcttcctggaaattttttctctaatctta
cgtggtgactttgagtctgatggggaattaacttctgaattgccacttctcccatcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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