KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00351
Entry
AMD24_00351       CDS       T04108                                 
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00470  D-Amino acid metabolism
xii00550  Peptidoglycan biosynthesis
xii01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:xii00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    AMD24_00351 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    AMD24_00351 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:xii01011]
    AMD24_00351 (murD)
Enzymes [BR:xii01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     AMD24_00351 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:xii01011]
 Precursor biosynthesis
  Amino acid ligase
   AMD24_00351 (murD)
SSDB
Motif
Pfam: Mur_ligase_M MurD-like_N Mur_ligase_C
Other DBs
NCBI-ProteinID: ALJ56532
UniProt: A0A0P0GHR9
Position
373526..374860
AA seq 444 aa
MRKKAAILGIGCSGEAAARLLHTHGWLVTSLDSSACTSIRTRIQTLPKKGMAFIIGAEAD
VDPASYDLCVLSPGIKLASPIAQNILRKQIPIISEIELAFRKCQVPVIAVTGTNGKSTTA
KLIETLLNRCGTHSRACGNIGPPFSEIVAQPRSDLHAVIVEVSSFQLETIHSFHPHIAVW
LNLSRNHLDRYHSMEEYRQAKLRIFLNQTSEDFAVVNARDRLPNLAAKSITFSAEDLTAD
FIKRESQILFRGTPILDQGHTPLRGSHNTENLMAALATGYCLGLSFGDMARAACLYSPLE
HRCEFVCRLNGTCWINDSKSTNLAALERAIQSQTAPLVLIAGGKDKGFEFDFLAPLVRER
VKIAILIGEMRHRIAISWQATPSKISETLEDAVCLAARLSAPGDIVLFSPGTSSTDMFSS
YEERGRHFKKLVYALPGQPIRCHV
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgaggaaaaaagcggctatcttgggaataggatgcagtggagaagcggctgcaaggctt
ctgcatactcatggctggttagttactagcctcgatagctctgcttgcacgtcgatacgt
acccgcattcagacactccccaaaaagggaatggcctttattatcggagcagaggcagac
gtcgatcctgcttcctacgacctttgtgtgcttagtccaggtattaagctagcaagtccg
attgcacaaaatattctacgtaagcaaattcccattatcagtgagattgagttagctttt
aggaaatgccaagttcctgtcattgccgttactggaactaatgggaagagtactaccgcc
aagctgatagaaaccctacttaatcgctgtgggacccactcccgcgcctgtgggaacatc
ggacccccattttctgaaattgtcgcccaaccgcgctctgatctacacgccgtaatagta
gaagtgagttccttccaactagagactatccatagtttccatcctcacattgccgtatgg
ttaaatctcagtcggaaccatttggaccggtaccatagtatggaagaatatcgtcaagct
aagcttcgcatttttcttaaccaaacttcagaggattttgctgtagtaaacgccagggat
agacttcctaatcttgcagcaaagtcgatcactttcagtgcagaggatctcacagcagat
ttcattaagagagagtctcagattctcttccgaggcactcccatactagatcagggtcat
acccccctccgtggtagccacaacactgaaaatcttatggctgcgctagcaacgggctat
tgccttggtctctcatttggagatatggcgcgtgcagcttgcctgtactcaccacttgaa
caccgttgtgagtttgtttgccgactgaatggtacctgctggattaatgattccaaatct
acaaatttggctgctttagaaagggccatccaatcccaaactgcccccctggtccttatt
gcaggaggaaaagacaaaggatttgagtttgatttccttgctcccttggtaagggagaga
gtgaaaatagccatactcattggagaaatgcgccaccgaatcgcaatttcctggcaagcc
acgccttctaaaatctcagaaacactagaagatgctgtctgcttagcggcaagactctct
gctccaggtgatatcgttctgttttctcctggaacctcctccactgatatgttctctagc
tatgaagaacgcggaagacatttcaagaagcttgtttacgccctaccagggcaaccaatt
cgttgtcacgtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (45)   

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