KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00406
Entry
AMD24_00406       CDS       T04108                                 
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
  KO
K02469  DNA gyrase subunit A [EC:5.6.2.2]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Brite
KEGG Orthology (KO) [BR:xii00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xii03032]
    AMD24_00406 (gyrA)
   03400 DNA repair and recombination proteins [BR:xii03400]
    AMD24_00406 (gyrA)
Enzymes [BR:xii01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     AMD24_00406 (gyrA)
DNA replication proteins [BR:xii03032]
 Prokaryotic type
  DNA Topoisomerases
   AMD24_00406 (gyrA)
DNA repair and recombination proteins [BR:xii03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      AMD24_00406 (gyrA)
SSDB
Motif
Pfam: DNA_topoisoIV DNA_gyraseA_C HU-CCDC81_bac_1
Other DBs
NCBI-ProteinID: ALJ56582
UniProt: A0A0P0G3Y3
Position
complement(437101..439686)
AA seq 861 aa
MYTQNGKAELVDVVEEMSRSFLDYSMSVIISRALPDARDGLKPAQRRILNAMYDLRLFPS
HQHVKCAKICGDTSGNYHPHGEMVIYPTLVHMAQRWAMRERLVEGQGNFGSVEGDPPAAM
RYTEARLTPLGAALMDDIFQETVDFVPNYDGRLTEPTVFPAAFPNLLVNGSMGIAVGMAT
SIPPHNLGEAIEATCAMITNPDITIDELSTHIRGPDFPTGCQIYGTSGIRQYFKTGRGSV
KVRGKAGVEEIKGGREQIVITEIPYNVNRAAFVERIAQLVSQKVITEISAVRDESDENTR
VVVELKRDTVPKVVINHLFKYTQLETSFPVYMLAIDHGQPKLLSLKEVIQCYTEHRREVV
LRRTRFLLRQAEERAEKLEGYLIALAHLDDFVRIAREATYREEAKTRLMAYKLAQDRVQS
IGICIRSVARLINGSYPFSATQADSVLELRLYQLTSLEQEKIKGEYQELLENIEDLKNIQ
ASESRVLSIIRSELRAVQKQYATARLTGIVSEESEIHIEDLIVNEGCIITVTYGGFIKRT
PVSAYRAQRRGGKGVIGMATRDTVGSGQEGDFVEHLFTASTHDYLMFFTKTGRCYVEKVY
EIPEMGRASKGRSVANLLNLQPGESIAATLRIQSKTINSGAVAVDLTWNASLYILFATES
GIVKKSNLVNFSNVRKGGIIAIRIEPGNQLIDAVLTTGDSEVILVTRRGMSIRFHEEELR
DQGRDTVGVLGIRLEEGDAVVGVAIVRPSATLLVAGENGIGKRTPFRDYRLQSRGGKGVI
TMKTGDKTGYVVGALAVNDRDELMLITTGGQLVRTHILGIREAGRNTIGVKLINLQAKEK
LQAIAPVVSQTTDEGPAPGEV
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgtatacacagaacgggaaggccgaattagtagatgtagttgaggagatgtcgcgatct
tttctcgactactctatgtctgttattatttctagagctcttccggacgctcgtgacggt
ttgaagcctgctcaacggcgtatccttaacgccatgtatgacctgcggctcttcccgagt
caccagcatgttaagtgtgcgaagatctgtggtgacacaagtgggaactaccatccgcat
ggcgaaatggtaatttacccaacacttgttcatatggcccagcgttgggccatgcgggag
aggttagtggaagggcaaggtaattttgggtcggtggaaggcgatcccccagctgcgatg
cgctatacggaagcgcgcctaacgcctcttggggcagccctcatggatgacatattccaa
gaaacggtagactttgttcccaactatgacgggcgcctgaccgaaccaacagtcttccca
gctgcattcccaaacctgctggtcaatggcagcatggggatcgccgttggtatggcaacg
agcatcccgccccataatctcggggaagcaattgaggctacctgcgccatgattaccaat
cctgatattacgatcgacgaattgtcaacccatatcagagggcctgattttcctactggc
tgtcagatttatggcacttccggaatccggcaatattttaaaaccgggcgtggctcggtt
aaggtgcgaggaaaggctggggttgaggaaattaagggcggtcgtgagcagatcgtaatc
acagaaattccctacaatgttaaccgtgccgcttttgtcgagcgcatcgctcagcttgtt
agccagaaggtgatcacagagatcagtgcagtgcgagatgagtcagacgaaaatactcgc
gtggttgtcgagctaaaacgggacacagtgccaaaggttgttattaatcacctctttaaa
tacactcagctggagacatcttttcctgtgtacatgttggctattgatcatggccaacca
aagttactctccctgaaggaagtaatacagtgttacaccgagcatcggcgcgaggtggtt
ttaaggcgcacgcgttttctacttcgtcaagcagaagaacgtgcagaaaaacttgaaggc
tacctcatagcgcttgctcacctggatgattttgttcgcattgctcgagaagctacttac
agggaggaagccaagacccgccttatggcatataaactggcacaggaccgagtacaatcc
attggcatttgcattcgaagtgtagcccgcctaatcaatgggagctatccctttagcgca
acgcaggcggactcagtcctagaattacgtctctatcaacttactagtcttgagcaagaa
aagatcaagggagagtatcaggaacttctagaaaatattgaggatctgaagaacattcag
gctagcgaatcccgtgtgttgagtatcattcggtctgaattgcgtgctgtccagaagcaa
tacgctactgcccgtcttactggaattgtatctgaagaaagtgaaatccacatcgaggat
ctcattgtcaatgagggatgcatcatcacggtaacctatggtggctttattaagcgtacg
cctgtgagcgcctatcgcgcccagcgtcgtggtggaaaaggagttatcggcatggctacg
cgggatactgtgggtagcggtcaggaaggagatttcgtcgaacatttatttacagccagc
actcatgattatctgatgttcttcaccaagacagggcgatgctatgtcgagaaggtgtat
gagataccagagatgggacgtgcctccaagggacgctccgttgccaatcttcttaacctc
cagcctggagagagtatcgctgctacactgcgaattcagtctaagaccataaattctggt
gccgtagcagtagatctcacttggaacgcttccctatacatcctctttgccacagaaagt
ggtatcgtcaagaagtctaaccttgtcaatttttccaacgtccgtaaggggggaattatt
gcaatcaggattgaaccaggaaaccagttaatcgatgctgtgcttaccaccggtgatagc
gaggtgatccttgttactcgtaggggaatgagcatccgtttccatgaggaggaattaagg
gatcaaggacgtgatacagtcggagttctgggtattcggttagaagagggagatgctgtg
gttggcgtcgctatcgtccgacctagcgccacgctacttgttgctggggaaaatggaatc
ggaaagcgcacccctttccgtgattatcggctgcaatcccgtggcggtaaaggagtcatt
acgatgaagaccggagataaaacaggctatgtagtgggtgcacttgccgtcaatgatcga
gacgagttaatgttgatcaccacggggggccagttagtccgcacccatatcctgggaatt
cgtgaggctgggcgtaacaccattggagtaaagttgattaatctgcaggcgaaagagaag
ctacaggcgatagctcccgtcgtgagtcaaacgactgacgagggtccagctccgggggag
gtataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (125)   
   KEGG ORTHOLOGY (1)   
   RefGene (122)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (135)   

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