KEGG   Xenopus laevis (African clawed frog): 100036809
Entry
100036809         CDS       T01010                                 
Symbol
mex3c.S, mex3c, rkhd2
Name
(RefSeq) mex-3 RNA binding family member C S homeolog
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    100036809 (mex3c.S)
   04121 Ubiquitin system [BR:xla04121]
    100036809 (mex3c.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100036809 (mex3c.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100036809 (mex3c.S)
Ubiquitin system [BR:xla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100036809 (mex3c.S)
SSDB
Motif
Pfam: KH_1 zf-C3HC4_3 Prok-RING_4 KhpA-B_KH KH_2 zf-C3HC4 zf-RING_UBOX
Other DBs
NCBI-GeneID: 100036809
NCBI-ProteinID: NP_001090570
Xenbase: XB-GENE-866162
UniProt: A1A5I7
Position
1S:complement(192803982..192817167)
AA seq 493 aa
MPGGASWRAGAELLLLEPEEMRLSLAALSLEEEEDEERPGEEVSEEAAALLMGGAGCQAG
FPPGSAEQSGRRKSVNTNELVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEP
VFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNAPSVGTVQCAPNIPGQTTVQVRVPY
RVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIAMRT
GNFIELNEENDFHYNGTDVSFETGNLASAWLSAHPTAPGRSRMNRISNYRNDSSSSLGSG
STESFFGNSRLADFSPSSPFSTGTFWFGETMPAVGSEDLSDASALDSIPSSSETIWAPFE
TGNPPSAYGGDASTKSRRRGSLSPTFPESLEYSLTKSDLSSTSEAGHPIYIPAFSNGSNS
YSSSNGGSTSSSPPETRRKHDCVICFDNEVIAALVPCGHNLFCMDCANKICEKDLPLCPV
CQSKVNQAIQIHS
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgccgggaggagcctcctggagagccggggctgagctgctgctgttggagcccgaggag
atgaggctgagtctggccgcgctgagcctggaggaggaggaggacgaggaaaggcccggg
gaggaggtttcggaggaggcagcggctctgctgatgggcggtgcggggtgtcaggccggg
ttccccccggggagtgcggagcagtcgggccgcaggaagagcgtcaataccaatgaacta
gtgcccgtgcccagctctgagcatgtggcggagattgtggggcggcagggttgcaaaatc
aaagctctgagggccaagacaaacacttacataaagacaccggtccgcggggaagagcca
gtattcgtggttactggaagaaaagaggatgtagccatggctaaaagggaaatcctttca
gctgccgaacacttttctatgataagagcatctcgcaacaaaaatgccccctctgtgggc
accgtacagtgtgccccaaacataccaggtcaaactacagttcaggtcagggtaccttat
cgggtcgtcggccttgttgttggtccaaagggagctacaattaaacgtatacagcaacag
acacacacttatatagtcactccaagccgtgataaagagccagtcttcgaagtaacaggg
atgccagagaatgtagatcgcgcacgtgaagaaatcgagatgcacatagccatgcgcact
ggcaatttcatagagttgaatgaagaaaatgatttccactataacggtaccgacgtgagt
tttgaaactggaaacctggcttctgcgtggctaagtgcgcatccaactgctcccggacgg
agcagaatgaacagaatctccaactacagaaatgatagctctagttctctgggtagtggc
tccactgaatccttttttggaaatagtagattggctgattttagtccttcaagtcccttc
agcacaggcactttctggtttggagaaaccatgcccgctgtgggatcagaagatctaagt
gatgcatctgctttggactcaataccgtcatcttctgaaaccatctgggcgccctttgaa
acaggaaatcccccctctgcttacggtggtgatgccagcacaaaatctcggcgtagagga
agtctgtctccaacctttcctgagagtctggaatattccctaacaaaaagtgacctttca
agcacaagcgaggccggtcatcctatctacatccctgcgttctccaacggcagcaacagc
tactcttcttccaacggcggatccacctcaagttcgccgcctgagacgagacggaagcac
gattgcgttatctgctttgacaatgaggttattgctgcccttgttccgtgtggccacaac
cttttctgcatggactgtgccaacaagatctgtgagaaagatttaccgttgtgtcctgtg
tgccagtctaaggtcaatcaggcaatccagatacactcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (35)   

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