KEGG   Xenopus laevis (African clawed frog): 100174804
Entry
100174804         CDS       T01010                                 
Symbol
nup98l.S
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100174804 (nup98l.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    100174804 (nup98l.S)
   03036 Chromosome and associated proteins [BR:xla03036]
    100174804 (nup98l.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100174804 (nup98l.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100174804 (nup98l.S)
SSDB
Motif
Pfam: Nup96 Nucleoporin2 Nup98_GLEBS Nucleoporin_FG
Other DBs
NCBI-GeneID: 100174804
NCBI-ProteinID: XP_041440603
Xenbase: XB-GENE-22169583
UniProt: A0A8J1MGE1
Position
2S:complement(167500515..167567351)
AA seq 1786 aa
MFNKTFGSPFGTGNGAFGATSTFGQTTGFGTTPATAFGSAGFGTNTSTGGLFGNAQTKPG
SLFGTNTFNQPATSSASSGFGFGTSTGTTNSLFGSTNTSNSLFSAQNNAFGQTKPTTFGN
FGTNASTGGLFGTTNTANPFGGASASLFGASTFTSAPTGTTIKFNPPSGTDTMAKGGVTT
NISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNPVGAPTGTGLFGTPAATSSTATG
MFGSTAANSFSFAGNKTTFGTAATGAFGTNTGALFGQPANQPAASLFNKPFGNATTTQTT
GFSFGNTSTLGQPQTSTMGLFGSNQATQPGGLFGTTTNTNAANAFGTGASLFGQPNATTF
GGSSTLFGNKPAGFGTTTTSAPGFGTTTGGLFGNKATLTLGTNTNASNFGFGSNTAGTGL
FGNKPATGTIGPSLGTSFGTALNPGQTSLFGGNQPKLTGTLGTGAFGGTGFNSTSTGLFG
APQAAATTLTDFNASAAQQMFLQQQYNALRYSPFPDSPLFMNPISDPKKKEELLKPTNPA
AQKAVLTPTHYKLTPRPAARVRPKALQYSGAAKNQLFDALDDDVPVLSSGVFMPKKSIKQ
LDLKYLKNSSLFSQKSKDLDEVVPPTPETQDRSVENHHADEENDEEAATTYPSPFSRPLP
QSQEKKQFNNMDDTIVALNMRKSGRIGLENSSNDVSFNEDSLRDTEILDASPHPAGITLM
RDSYYTIPSMEELARSVDENGECIVDGFTIGREGFGSIYFDGIINLTNLDLDSIVHIRRK
EVIVYVDDQNKPPLGEGLNRSAQVTLDEVWPVDKTTRCTITSPERLNEMNYKAKLENASR
KQGAQFVDYRPESGSWVFKVNHFSKYGLQDSDEEDDQLNNAEAKKLKAAPVPPQGKPPPL
QQATLPGKVTPPPQSPAVDQLDRVLELDSDMADITQDQDLDSVAEEQDITEEQEPLSASS
HIASSLGINPHALQVMKASLLLEEEDGEMINRFSSFPSSMDPYPDVRSPRLFPSSHAKRT
SSMGLLQSKFASPSISRISETAQGSHSPRILPVTPWSVPAPLAPTFVIPRPAPETHLRTV
GTRRQQELVPLEKSVTHGRGSLLIDMGLFMGRSFRVGWGPNWTLVHNGDKLTERLNAEED
QNMDTIDYGFLPKPTSAKSLTESPFKVHMEKLSLEQKSRELQSYLMPLEIELKNSSVDRS
AQCPHFKPNAGVAAIHDYAGWVRNLSNEAGELEAVVKQWGLTWTLCESLWGQLKELEASL
DEPNEYVRNLERRKAFSHWLAHTAEERIEEEVSLYGPERHVEAVFSFLTGGRISDACRLA
QKSGDHRLSLLLSQMVGSQEMRELISLQLVDWNKLQVDHYIQEERLRVFCLLSGTPVWRS
SDNRSINVCSQLDWKRTLAVHLWYMLPPTATIAQALRLYERAFQEHEEGEPYACYPLPPY
LEDCSISLGDEPSAKFSSLQRDVCVHLLKLYSERQYDLCQLLDPSSVTPDPLDYRLSWHL
WMVLQALNYTHLSEHRQGTLHASYAAQLENVGLWEWAIFVLLHIPHPHIREAGVRELLNR
QCVVRESPESLAKENFLIHRLCVPAQWVHEAKAIRSRRDGDRHKEALYLLKGHQWNPCHK
LVTRHLAADAVINENYRYLQSFLGELSNPEHCKHIQDWETAGKVYLDYIRVIDMLNLIQQ
DESSGCELEKLHTKVMSLCKWVELIHCYTAKDRLAQSEMAKRVANILRVVLSLQQPPESM
SDSSEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQSYLRELICDS
NT seq 5361 nt   +upstreamnt  +downstreamnt
atgttcaataaaacatttggaagcccctttggcactggcaatggtgcgtttggcgccacc
tcaacttttggacagacaactggctttgggaccacccctgccacggcatttggctctgca
gggtttggcacaaacacaagtaccggggggctgtttggaaacgcacagaccaagccaggt
agcttgtttggaaccaatacctttaaccagccagcaacttcctctgcaagctcaggcttt
ggctttgggacctcaactggaactacaaacagtttatttggctctactaacacaagcaac
agcctcttctccgcacagaacaatgccttcggacagaccaaacctacaacctttggaaat
tttggaacaaacgccagcactggaggcctcttcggcaccacgaacacggcaaatccattc
ggtggggcctctgcatctctgtttggcgcctcaacattcacttctgctccaacaggaacc
acaattaagtttaatcccccatctggcacagacaccatggcaaaaggaggagtcactacc
aacatcagcaccaagcaccagtgtattactgccatgaaggaatacgagagcaagtccctt
gaggaacttcgtcttgaagattaccaggcaaataggaagggcccccagaatcctgttggt
gcacctacaggaacaggcttatttggcaccccagcagcaacttcaagcactgcaaccggt
atgtttggatctactgcagcaaacagcttctcctttgctgggaataaaactacatttggc
acagcagccaccggtgcatttggaacaaatactggggctctctttggccagcctgctaat
cagccagctgctagcctgtttaacaagccctttgggaatgcaacaactacacaaactact
ggcttttcatttgggaacacaagtacacttggacaaccacaaacaagcactatggggctc
tttggatcaaaccaagccacacagcctggtggtctctttgggacaacaaccaatacaaat
gctgccaatgcatttggcactggagctagcctgtttgggcaacctaatgctacaactttt
ggaggcagctcgaccctgtttggtaacaaacctgccggttttgggacgaccacgaccagt
gcccctggatttggcactaccactggcgggctctttggtaacaaagcaaccctgacttta
ggaaccaatacaaacgcttccaattttgggtttggctcgaacaccgcaggaaccggcctg
tttggcaataagccagcaacgggaaccatcgggcccagccttgggacaagctttggaaca
gcgctaaaccctggccagacatctttgtttgggggcaatcagcctaaactgactggtaca
cttgggacaggagcgtttggtggtaccgggtttaacagcacctcaacaggcctatttgga
gctccacaggctgcagcgacaaccctgactgatttcaatgcttcagctgcacagcagatg
ttcctacagcagcaatacaatgcacttagatattcccccttcccggactcccctctgttc
atgaaccccatctctgatccaaagaagaaagaggagctcttgaaacccaccaacccagct
gcccagaaagctgtattgactcccacacactacaagctaactcctcgcccagcagccaga
gtacgtcccaaagcattgcagtacagtggagcagccaaaaaccaactctttgatgccttg
gatgatgatgtgccggtcctgtccagtggtgtgttcatgcccaagaaaagcataaaacaa
ctggacttgaagtacctgaagaacagcagcctattttcccaaaagagcaaagatttggat
gaggtggtgccaccgactcccgagactcaagacagatctgttgaaaaccaccatgctgat
gaagaaaacgatgaagaggcagccactacatacccatcccccttctccaggcccctccca
caaagccaggaaaaaaagcagtttaacaatatggatgacaccattgtagcactgaatatg
cgcaagtctgggagaatcggactggagaacagcagcaacgatgtctcctttaatgaggat
tctcttcgagatacagaaattcttgatgcttctccccaccctgcaggaattaccctaatg
agggacagctattacaccatcccatccatggaggaattggccagaagtgtggatgagaat
ggggaatgtatagtcgatggcttcactattgggcgggaaggtttcggatcaatatacttt
gatggaatcattaatctgaccaatttagatcttgattcaattgtacacatccgcaggaag
gaggttattgtgtatgtggatgaccagaacaagccccctcttggtgaaggtttgaacaga
tctgcccaggtgaccctggatgaagtgtggcccgttgataagaccacgcgttgcacgatt
acaagtcccgagcgactgaatgaaatgaactacaaggccaagttagagaacgcctctcgt
aagcagggggcccagtttgtggattatcggccggagagtggttcctgggtgttcaaggtg
aatcacttctctaagtatggcttgcaggactctgatgaggaagatgatcagcttaacaac
gcggaggctaaaaagctgaaagctgcccctgttcctcctcaaggcaaaccgcctcctctc
caacaagcaactctccctggaaaagtcacccctccaccccagagtccagcggtagatcaa
cttgatcgggtgctcgaactggacagcgatatggctgatattacccaggaccaagatctg
gattctgttgcagaggagcaggacatcactgaagaacaggagcctttatctgcatcttcc
cacattgcatcttccctgggtattaatcctcatgccctgcaggtgatgaaagcttcgctg
ctactggaggaagaggatggagaaatgattaatcgcttcagcagtttcccttccagtatg
gacccatacccagatgttaggtctccccgccttttcccatcatcccatgcaaagaggact
tcctctatgggactgctgcagtctaaatttgcatccccctccatatcccggataagtgag
actgctcaaggctcccacagtcccagaattcttcctgttacaccatggtccgtcccagca
cccctagctcccacctttgttataccccgccctgctccagagactcatctgaggactgtg
ggaacccgaaggcaacaagaactggttccactagagaagtctgttacacatgggcgcggc
tctcttctgatcgacatggggctgttcatgggcaggtcgtttcgtgttggttggggcccc
aattggacccttgttcataatggtgataagctaactgagagactgaatgcagaagaagac
cagaacatggacactatcgattatgggtttctacctaagcccacgtctgctaaatctctc
acagagtctccatttaaagttcacatggaaaagcttagcctggagcagaagagcagagag
ctgcagtcgtacttgatgccactggagatagagctgaaaaacagcagtgtggatagatct
gcccagtgcccccactttaagccaaacgctggagtcgctgccattcatgactatgcagga
tgggtcaggaacttgtccaatgaggctggagagcttgaagcggtcgtgaagcagtggggt
ctgacgtggaccttgtgtgaatctctctggggccaactgaaggagctggaggctagtttg
gatgagccaaatgagtatgtgaggaacctggagaggaggaaggctttctcccactggctg
gctcacactgcagaggaacgtatagaggaggaggtgtctctgtacggcccagagagacac
gttgaagccgtatttagtttcctaacggggggcaggatcagtgacgcttgccgtctggca
cagaaatctggtgatcacaggctgtccctgctgctctctcagatggtcggaagccaagaa
atgcgggagctgatttccctgcagctggtggattggaataaactgcaggtggatcattat
atccaggaagagaggctgcgtgttttctgcttgctctctggcactcctgtgtggcgctct
tctgataacagaagcataaacgtctgctctcaattggactggaagcgaacgctggccgtt
catctctggtacatgctccctcccactgccaccattgctcaggccttaagactgtacgag
cgggcctttcaggagcatgaagaaggggagccgtatgcctgttacccgctccctccctat
ttggaagactgtagcatcagcctcggggatgaaccttcagccaaattctcctccctgcag
agagatgtctgtgtccatttgctgaaactgtacagtgaaaggcaatacgatctgtgtcag
ttgttggaccccagtagtgtgaccccagatcctctggactacagactcagctggcactta
tggatggtcttacaggctctaaattatacccatttgtctgagcatcgccaggggacgctt
catgccagttatgctgcccagctggaaaacgtcgggctctgggaatgggccatatttgta
ctgctgcacatcccacatccacacatccgtgaagcaggtgtccgggagttgctgaatagg
cagtgtgttgtgcgggagagcccagagtctctggcaaaagagaatttcctaattcaccgt
ctctgcgtcccagcacaatgggtccacgaagccaaagcaatccgctccagacgggacgga
gaccggcataaagaggccttgtatttactaaagggccaccaatggaatccctgccacaag
ctggtgacccgacacttggctgcagatgccgttattaatgagaactacagatacctgcag
agctttctgggtgagctgtccaaccccgagcactgcaagcacattcaggactgggagact
gcagggaaggtctatctggattatatccgtgttattgacatgctcaacctgattcagcag
gacgagagctccggctgtgagttggaaaagttacacaccaaagtaatgtctctgtgtaaa
tgggtcgagctgatccactgctacacggccaaagatcgattggcacagtcagaaatggcg
aaacgcgttgccaacatcctccgagtggtgctgagtctgcagcagcccccagaatccatg
tcagactcttctgaaccccgtgtgcccttaagacttcttgccccacatattgggcgcctc
cctatgcccgaagactacgccctggaggaactccgaggcctcacccagtcttatttaaga
gaactgatttgtgacagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (72)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (93)   

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