KEGG   Xenopus laevis (African clawed frog): 379695
Entry
379695            CDS       T01010                                 
Symbol
polr1b.L, polr1b
Name
(RefSeq) polymerase (RNA) I polypeptide B L homeolog
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    379695 (polr1b.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    379695 (polr1b.L)
Enzymes [BR:xla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     379695 (polr1b.L)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     379695 (polr1b.L)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2
Other DBs
NCBI-GeneID: 379695
NCBI-ProteinID: NP_001080005
Xenbase: XB-GENE-1008542
UniProt: Q6PCJ2
Position
5L:38079487..38104336
AA seq 1134 aa
MDTDAKWQALLREPSLAKLTSPDYGIPGESQHPPLQEITRAHIDSFNQAMTEGLSLAVQA
MKPLEFTYRNDKVALQIVDAVLSHPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSW
SLNGMQKGIIKQTLGQFPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIR
MLIMPRRNFPIAMIRPKWKNRGPGYTQYGISIRCVQDEHTAVNMNLHYLENGSVMVNFIY
QKELFFIPLGFALKALVEFSDYQIFTELIKGKEDNSFYRDCMTQMLRVVVEEGCHNQKNV
LKYLGERFRVKFYLPEWYTDEQAAEFLISHCICIHLKTNVEKFYMLCMMTQKLFTFAKDG
CMEENPDSLMYQEVLTPGQLLLMFLKEKMESWLLGVKLNLDKRAHKLVDLTTETMGKILT
STSDLTKLCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKM
RTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTSLPLLLCSLGMTP
VDGAAGKSFADCYPVMLDGAMVGWVENNVAPGLVNALRIYKVKHDKNVPPWTEIVLIPMT
GKASLYPGLFVFTTPCRLVRPIRNLALGKEELLGTLEQVFLNVAIYEGEIVPGETTHQEL
FPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPL
VRPSMYDYYEMDNYPVGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDL
SKKLKDGEDNIVFGIKPDDERVKGRLDNDGLPPVGAVLQFGDPYYGYLNFNTGESFVAYY
KSKENCVVDNIKICSNDIGFGKFKSVCITMRIPRNPTIGDKFASRHGQKGILSRLWPSED
MPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEY
FGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFHCSDRSTAHMCVECGSLIAPFL
EKPPPSWSSIRNRKHQCVVCNRTDTVEAVSVPYVFRYFVAELAAMNINVKLSVN
NT seq 3405 nt   +upstreamnt  +downstreamnt
atggacacggacgcaaagtggcaggcgctgctcagagaaccgagcctggccaaacttact
agtcccgactatgggattcccggggagagtcagcaccctcctctgcaggagatcactcgg
gctcatatcgactccttcaaccaagcaatgacagaggggctgagtctggcggtgcaggct
atgaaaccacttgagtttacttacagaaatgacaaggtggcactgcaaatagtggacgca
gttcttagccaccctctagtgcctaagggaagcatctgcaaagagcaaaagatataccca
gcagaatgcagaggaagaagaagtacataccggggcaagttgactgctgatgtaagctgg
tccttaaacggaatgcagaaaggcatcattaaacaaactcttgggcagtttccgatcatg
gtgaagtcaaagttttgcaacctgtatgaccttaacccaaagcaacttcttgagcaccat
gaggaagagcaggaaatgggaggatatttcattataaatggaatagagaaggttatcaga
atgcttattatgcctcggaggaactttcccattgccatgattcgtcccaagtggaagaat
agaggacctggttacactcagtatggtatttcaattcgttgtgtccaagatgaacatact
gcggtcaacatgaatctgcactatctggagaatggctctgttatggtgaatttcatctat
caaaaagagctctttttcattccactgggctttgcattaaaggctctggttgaattttca
gattaccagattttcactgaattgatcaaaggcaaggaagacaattccttctacagagac
tgtatgactcagatgctgagggttgttgtggaggaagggtgtcacaatcagaaaaacgtc
ctcaagtaccttggggagaggttccgggttaagttttaccttcctgaatggtatacagat
gaacaagctgctgagttccttataagtcattgcatctgcatacatcttaaaaccaatgtt
gaaaagttttatatgctctgtatgatgacgcaaaagctgttcacatttgccaaggatgga
tgcatggaggaaaatcctgacagcttaatgtaccaggaagtgctgacacctggccagctt
ttactgatgtttttgaaggaaaagatggagtcatggctgttaggagtgaagcttaatctg
gacaagagagctcataaattagttgatctaactactgaaaccatggggaaaatattgact
tcaacatcagatctcacaaaattgtgtgaatatctgctggctactggtaatcttcgctct
aaaactggtcttggcatgctacagtcttctggtctggtagtggttgctgataagctaaac
ttcattcgctacctctcccacttccgttgtgtacatagaggtgcggctttcgccaagatg
agaaccacctcagtgcgtcgccttctgccagagtcttggggtttcctatgtcctgtacac
acacccgatggtgaaccgtgtggtctcatgaatcacatgactgcagcgtgtgagattgtg
acacagacctcctacaacacttcactgccattgttgctctgctcattagggatgactcct
gttgatggagcagctggaaaatcttttgcagactgttaccccgtcatgctagatggagcc
atggtgggttgggtggagaataacgtagctcctggccttgtcaatgcacttcgaatatat
aaggtgaaacatgataagaatgtgcctccatggacagaaattgtccttatcccaatgact
gggaaagcaagtctgtatcctgggctttttgttttcaccaccccttgcaggttggtacgt
cccatcaggaatttggccttgggtaaagaggaactgcttggcactttggaacaggttttc
ttaaacgtggccatttatgagggtgagattgtacctggagagaccactcaccaggagctt
ttcccacacagcatgctgagtgtggtagcgaatttcatccctttctcagaccacaaccag
agtcccagaaacatgtatcagtgtcagatgggtaagcagacaatgggctttccgcttatg
acttaccaggatcgctctgataacaaactgtaccggctacagaccccacagagtcctcta
gttaggccttctatgtatgattattatgagatggataactatcccgttggcaccaatgca
attgtagcagtcatttcatataccgggtacgacatggaggatgccatggttttaaacaag
tcatcatgggaaagaggctttgctcatggaagcgtgtataaaactgaccatgtggacctc
agtaaaaaacttaaagatggagaagataacatagtatttggcatcaaaccagacgacgag
cgggtgaaaggaagactggacaacgatggtctccctcctgttggtgctgttttgcagttt
ggagatccttactatggctacctgaactttaacacaggggagagctttgttgcctattac
aagagtaaagaaaactgtgtggttgacaacatcaagatctgcagcaatgacattggtttt
ggaaagtttaagtctgtttgtatcaccatgagaatcccccgtaatccaacaatcggtgat
aaatttgcgagtcggcacggccaaaagggtattttgagtagactttggccatctgaggat
atgccatttacagagagtggaatggtaccggatattcttttcaatcctcatggattcccc
tccagaatgaccattgggatgctgatagagagcatggctggaaagtcagcagcgttgcat
ggtctctgccacgatgccacacccttcaccttttctgaagagaactctgcccttgaatat
tttggagagatgcttagagcaggtggctacaacttctacggcacagagaaactatacagt
ggcataagtggcctggagcttgaagcagatattttcatcggggtcgtttactaccaacgc
cttcgtcacatggtctctgataagtttcaggttagaacaacaggtgccagggataaagtt
accaaccagccggtgggagggcgtaatattcaaggtggtatacgttttggagaaatggag
cgggatgccctgctggcccatggtacctccttcctgcttcacgatcgtctctttcactgc
tcagataggtcgacggcacatatgtgcgtggaatgtggaagcttgattgctccttttttg
gaaaagccccctccttcctggtcatccatccgtaaccggaaacaccagtgtgtggtctgt
aatcgtacagatactgttgaggctgtatccgtgccttatgtatttcgatattttgtggct
gaattagcagccatgaatatcaatgtgaaactaagtgtgaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (45)   

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