KEGG T01010: 398680

Xenopus laevis (African clawed frog): 398680

Entry

398680            CDS       T01010

Symbol

rlim.S, rlim, rlim-a, rlim-b, rlim.L, rnf12, rnf12-A, rnf12b, xrnf12

Name

(RefSeq) E3 ubiquitin-protein ligase RNF12-A

K16271

E3 ubiquitin-protein ligase RLIM [EC:2.3.2.27]

Organism

xla Xenopus laevis (African clawed frog)

Brite

KEGG Orthology (KO) [BR:xla00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xla04121]
    398680 (rlim.S)
Enzymes [BR:xla01000]
2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     398680 (rlim.S)
Ubiquitin system [BR:xla04121]
Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    398680 (rlim.S)

SSDB

Motif

Pfam:

zf-RING_2 zf-rbx1 zf-RING_11 zf-C3HC4_2 zf-C3HC4 zf-ANAPC11 zf-RING_5 zf-C3HC4_3 zf-RING_UBOX Prok-RING_4 zf-RING_16 zf-RING-like zf-RING_4

Other DBs

NCBI-GeneID:

398680

NCBI-ProteinID:

NP_001082725

Xenbase:

XB-GENE-866117

UniProt:

Q641J8 A0A9U5B630 A0A974C3D6

Position

8S:55299671..55321548

AA seq 622 aa
MESADSTGKGSIEQSESQRQSQMDRLDREEAFYQFVNNLNEDDYRLMRDNNLLGTPGEIT
KEELLRRLQQIKEGPPQPSTEETRGDSVSTGGDPAEDSSNGDSIIDWLNSVRQTGNTTRS
GQRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGNPSMPSLDQSAEMPGAEDMEVSSQGE
AENEPEPIPIATRSAPAEVTVEEAPIQRGQRRARSRSPDQRRTRARTDRSRSPLHHAVDP
PIRRAPHSSSQTVDTSNTEEAEGSSRTRHHVSSQVQNSSSSNETEGSSRTRQHIPARQQV
LGTEGQSQSTVHLSNPETRSSSQTPQTDSSTNAETTGTGQRPPTIVLDLQVRRVRPGDYR
QRDSIANRTRSRSQTPNNTVTYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRILNTGL
SETTSVAIQTMLRQIMTGFGELSYFMYNDNDTDPNNPTAVSPTAAVPGEAQNNANAEVRA
PSAEPTEPVAPVETDEGSNVSTTATRREGRNSRGAVTFEESGSLPFLSLAQFFLLNEDDD
DQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLS
ENSTCPICRRAVLVASNRESIV

NT seq 1869 nt +upstreamnt +downstreamnt
atggagagtgctgattccacgggaaaagggagcattgaacagtccgaatctcagcgccaa
agccagatggacaggctagatcgagaagaagctttttatcagtttgtaaataacttaaat
gaggatgactaccgccttatgagagataacaatttattgggtactccaggggaaattact
aaagaggaattgttgcgaagacttcagcaaatcaaagaaggtcctccacagccaagtaca
gaagaaacaagaggcgattctgtctctacaggtggggaccctgcagaggattcctccaat
ggagattctataatagattggctgaattcagtgcggcagaccgggaatacaacacgaagt
ggtcagagaggcaaccagtcctggagggcagtgagcaggacaaatccaaacagtggtgat
ttcaggtttagtttggaaatcaatgtgaatcgtacttctggcaacccaagtatgccttcg
cttgaccaatcggctgagatgcctggggctgaggatatggaagtgagcagtcagggtgag
gctgagaatgaacctgaacctataccgattgccacaaggtcagcaccagcagaggtgact
gtagaggaagcaccaatacagagggggcaaaggagggcccgaagcagaagtccagatcag
cgcagaactcgagctagaactgatagaagcagatcccctctgcatcacgctgttgaccca
cctattcgaagggctccgcattcttcatcacagactgttgatacttccaatacggaagaa
gcagagggtagctctaggactaggcaccatgttagttctcaagtgcagaacagctcttca
tcaaatgaaacagagggtagctctagaactagacagcatattccagctagacaacaagtt
cttgggactgaaggtcagagccaaagcactgttcatctgtcaaacccagagaccagaagc
tcttcccaaacacctcaaacagactcctccactaatgcagagactacaggtaccggacag
aggcctcccaccattgtcctagatctgcaggtaaggcgcgtgcgcccaggtgactacagg
cagagagacagcatagctaacaggacacgttcacgctctcagactcccaacaacacagtc
acatatgagagcgaaagaggagggtttcgccgcactttctcacggtctgaacgtgctgga
gttagaacatatgtaagtaccatccgtattccaattagaagaatcctgaacactgggctc
agtgaaaccacatctgtggccatccagacgatgctgaggcaaataatgactggctttggt
gagctcagctacttcatgtacaatgataatgatactgatcctaacaaccccacagcagta
tctcctactgcagcagttcctggtgaagcacaaaacaatgcaaacgcagaggtcagagct
cctagtgctgagcctacagaacctgttgctccagtggaaactgatgaaggcagcaatgtt
tcaactactgctaccaggagggagggccgcaatagcagaggggctgtcacatttgaagaa
agtggatccctaccttttcttagtctggcccagttcttcctgcttaatgaggatgatgat
gatcagccaagaggactcaccaaagagcaaatcgataacctgtccacgcggaactttggt
gaaaatgatgccctgaaaacatgtagcgtgtgcataacagaatatacagaagggaacaag
ctgcgcaaactgccttgttctcatgagtaccacatccattgtatcgaccgctggttgtct
gaaaattctacctgtcccatctgtcgcagagcggtcctggttgcaagcaacagagagagc
attgtgtaa

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