KEGG   Xenopus laevis (African clawed frog): 398890
Entry
398890            CDS       T01010                                 
Symbol
polr2b.S, polr2b
Name
(RefSeq) polymerase (RNA) II (DNA directed) polypeptide B, 140kDa S homeolog
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03020  RNA polymerase
xla03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    398890 (polr2b.S)
  09124 Replication and repair
   03420 Nucleotide excision repair
    398890 (polr2b.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    398890 (polr2b.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    398890 (polr2b.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     398890 (polr2b.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     398890 (polr2b.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      398890 (polr2b.S)
SSDB
Motif
Pfam: RNA_pol_Rpb2_1 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 398890
NCBI-ProteinID: NP_001083372
Xenbase: XB-GENE-1012879
UniProt: Q6PA46
Position
1S:81637207..81748656
AA seq 949 aa
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVSFTSIVYFGKYSNLNECSVSMIQRHL
NT seq 2850 nt   +upstreamnt  +downstreamnt
atgtacgatgcagatgaagatatgcaatatgatgaagatgatgatgaaatcactccagat
ctgtggcaggaggcatgttggattgttattagctcttattttgatgaaaaaggtttagta
cggcaacagcttgattcctttgatgagtttatacagatgtccgtacagaggattgtcgaa
gatgccccacctatagaccttcaagctgaagctcaacatacgacaggagaagtagaagag
cctcctaggtacctgttaaaatttgaacagatttatttatctaagcctacacattgggaa
agagatggtgcaccctcaccaatgatgccaaatgaagcaaggttaagaaatctaacatat
tctgcccctctttatgtggacataactaagaccgtggttaaagaaggagaggaacaaatt
caaacacaacatcagaaaacatttattggcaaaataccaattatgttacgatcaacatac
tgtttgttgaatggactgactgaccgtgatctttgtgagttaaatgaatgcccacttgat
ccaggcggctactttattataaatggatctgaaaaggttcttattgctcaagaaaagatg
gctacaaacacagtatatgtgtttgcaaagaaagattcaaagtatgcttacactgctgag
tgtaggtcctgtctggaaaattcgtcaagaccaactagttctatatgggttagcatgctt
gcaagaggaggtcagggtgccaaaaaaagtgccataggtcaacgcattgttgcaacccta
ccttatatcaagcaggaagttcccattattattgtcttccgtgctttaggatttgtgtct
gacagggacatattagaacatattatttatgactttgaagatccagagatgatggaaatg
gtcaaaccatctcttgatgaagcctttgttatacaagaacaaaatgtggctctgaatttt
attggttctagaggtgccaagcctggtgttacaaaagaaaaaagaatcaaatatgcaaaa
gaagttctacagaaggaaatgcttccacatgtcggcgtcagtgacttctgtgaaacaaaa
aaagcatactttctaggatacatggttcacagactacttctggctgcactaggaagaagg
gaactggatgatagagatcactatggtaacaaaagattggatctggctgggccgttgctt
gcttttctttttcgagggatgttcaagaatttgctgaaagaagttcggatatatgcacag
aaatttattgaccgaggaaaagattttaatctagaactagcaattaaaactaggataatt
tctgatggattgaagtattctttagccactggaaactggggtgaccaaaagaaagcacat
caagcaagagctggtgtatcacaggtgttaaatcgccttacctttgcatcaactctttct
catttacggagattaaattctcctattgggagggatggaaaacttgcaaaaccacgacaa
ttgcacaacactctgtggggaatgatttgtcctgctgagactccagagggccatgctgta
ggacttgtaaagaatttggcattgatggcctacatttctgttgggtctcagccatcacct
atactagagtttttagaagaatggagtatggaaaaccttgaagaaatttctccagcagcc
attgcagatgccactaaaatctttgtgaatggttgctgggtcggaattcacaaagatcca
gaacagctgatgaacacacttcggaagctacgccgccaaatggatataattgtttctgag
gtgtcaatgattcgagatatccgagaaagggaaatccgtatttatactgatgctggtcga
atctgcaggccactgttaattgtggaaaagcaaaagcttcttctaaaacggagacatatt
gatcagctcaaagagagagaatacaataattacagttggcaggatcttgtagctagtggt
gttgtggaatatattgatacactagaggaagagactgtcatgcttgctatgacgccagat
gacttgcaggaaaagggggtcgcttattgttcaacatatacgcactgtgaaattcatccc
tcaatgatcctaggagtctgtgcttctattattccattccctgatcataaccagtctcct
agaaacacatatcaatctgccatgggtaagcaggcaatgggtgtctatattacaaatttt
catgttcgtatggataccttggcacacgttttatattacccccagaaacctctggtaact
acaaggtccatggagtacctgagattcagagaacttccagcaggtatcaactccattgta
gctattgcttcttatactggatataatcaagaagactctgttattatgaatcgctctgct
gttgacagaggatttttcaggtctgttttctaccgttcgtacaaagaacaagagtccaaa
aagggatttgatcaagaagaggtttttgagaaaccaactcgtgaaacgtgccagggaatg
aggcatgctatctatgataaacttgatgatgatggcttgatagcacctggtgtacgtgtg
tcgggggatgatgtaatcattggcaagacagtaactctgcctgaaaatgaagatgagtta
gaaagtactaaccgccgttacaccaagagagactgtagtacttttctgcgtaccagtgaa
actggaattgttgatcaggttatggtgacacttaatcaagaggggtacaagttttgtaaa
ataagggtaagttttacaagtattgtatattttggaaaatattcaaatctgaatgaatgc
agtgtcagcatgatccagaggcacctataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (66)   

Download RDF
DBGET integrated database retrieval system