KEGG   Xenopus laevis (African clawed frog): 399317
Entry
399317            CDS       T01010                                 
Symbol
ubtf.L, ubf, ubf1, Ubtf, ubtf-a, ubtf-b, xUBF, xUBFbeta2
Name
(RefSeq) nucleolar transcription factor 1-A
  KO
K09273  upstream-binding transcription factor
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xla03000]
    399317 (ubtf.L)
   03021 Transcription machinery [BR:xla03021]
    399317 (ubtf.L)
Transcription factors [BR:xla03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   UBF
    399317 (ubtf.L)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    UBF
     399317 (ubtf.L)
SSDB
Motif
Pfam: HMG_box_5 HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 399317
NCBI-ProteinID: NP_001095257
Xenbase: XB-GENE-6254049
UniProt: P25979 A0A974BX16
Position
9_10L:5181582..5192769
AA seq 677 aa
MNGAAGGVTQAKMTAPKDQDPWSQDEMLTLIQTMKTLLPSQDNSKFKTTESHLDWNKLAF
KNYSGSMCRQKWMEISNEVRKFRTLSELILDAEEHVRHPYKGKKLKKHPEFPKKPLTPYF
RFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKLEFERNLARFR
EEHPDLMQNPKKSDVPEKPKTPQQLWYNHERKVYLKLHADASTKDVKDALGKQWSQLTDK
KRLKWIHKALEQRKQYEGIMREYMQKHPELNIAEEGITRSTLTKAERQLKDKFDGRPTKP
PPNSYSMYCAELMANMKDVPSTERMVLCSQRWKLLSQKEKDAYNKKCEQRKKDYEVELMR
FLESLPEEEQQRVLAEEKMVRSRSGQADKKKAADERAKLPETPKTAEEIWQQSVIGDYLA
RFKNDRAKALKSMEGTWLNMEKKEKIMWIKKAAEDQKRYERELSDMRATPTPTTAGKKVK
FLGEPKKAPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWHRISPSQKDYYKKLAEDQ
QRVYRTQFDTWMKGLSSQDRAAYKEQNSNKRKSTAKIQVPVAKPKLVAQSKSDDDDEDDD
DDEDEDDDDDEDEDKEDSSEDGDSSESSSDEDSEDGEENEDEEGEEDEDEEEDDDDNESG
SSSSSSSSADSSDSDSN
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgaacggagcagctggtggtgtcacacaagcaaaaatgacggccccaaaagatcaagac
ccatggtcccaggatgaaatgttgactctcatacaaaccatgaagaccctcctgcccagc
caggacaactccaagttcaagaccacagagtcccacctggactggaacaagttggccttc
aagaactattccggttccatgtgtcgccagaagtggatggaaatctccaatgaggtcagg
aagttccggactctctcggagttgatcctggatgcggaggaacatgtgagacatccatac
aaaggcaaaaagctgaagaaacaccccgagtttcccaagaagccactcaccccttacttc
cgctttttcatggagaagagagctaaatatgcaaagctgcaccccgaaatgagtaatctg
gatctcactaagattctgtccaaaaagtacaaagagctgccagagaagaaaaagatgaaa
tacatccaggacttccaaagagagaagctggagtttgagaggaacctggctcgattcagg
gaggagcatcctgatctcatgcaaaatccaaagaagtctgatgtcccggagaagcccaag
acccctcagcagctgtggtacaaccacgagaggaaggtctacctgaaactgcatgcagat
gccagcactaaagacgtgaaggacgcattagggaagcagtggtcccagttgactgataaa
aagcgcctgaaatggatccataaggccctggagcaacgcaagcaatatgagggcataatg
agggaatacatgcagaagcacccagaactcaacatcgcagaagagggcatcactcgctca
actctcaccaaggctgagcgccagctgaaggacaagtttgatggccggccaaccaagcct
ccaccgaacagttactccatgtactgtgcagaactgatggccaacatgaaggacgttccc
agcacagagcgcatggtcctctgcagccaaaggtggaagctgctctcccagaaggagaag
gacgcctacaacaagaagtgcgagcagagaaagaaagactatgaagtggagttgatgcgt
ttccttgagagtctcccagaagaggagcagcagagggttctggctgaagaaaagatggta
aggagcagatctggacaggccgacaagaagaaagcagcagatgagagggccaaactcccg
gagactcccaaaaccgccgaagaaatctggcaacaaagcgtgattggagactatcttgct
cgcttcaagaatgaccgcgctaaagccctgaagagcatggagggcacgtggttaaatatg
gagaaaaaggagaaaatcatgtggataaagaaggcagcagaggaccagaaacgatatgag
agagaactaagtgatatgcgtgccactccgaccccaacgacagcaggaaagaaggtcaag
ttcctgggagaacccaagaaagcacccatgaatggctaccagaagttctcccaggagctc
ctgtccaacggagaactcaaccacctcccccttaaggaacgtatggtagaaattggaagc
cggtggcacaggatttctccctctcagaaggactattacaagaagctggcagaggaccaa
cagagggtctatcgtactcagtttgacacctggatgaagggtttatcgtcacaagaccgg
gcagcatacaaggaacagaattcaaataaacgcaaaagtacagcgaaaatacaggttccc
gtcgcaaaacccaaattagtagctcagagcaaatcggatgatgatgacgaagatgatgat
gacgacgaggatgaagacgatgatgacgacgaggatgaagataaggaggactcgtctgaa
gatggagactcttcagagtctagcagtgatgaggacagtgaggatggagaagagaacgaa
gacgaagaaggcgaggaggacgaggatgaagaagaggacgacgatgacaacgaatcggga
tccagctcttcttcctcctcttctgcagactcttcagactcggactctaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (66)   

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