KEGG   Xenopus laevis (African clawed frog): 431804
Entry
431804            CDS       T01010                                 
Symbol
rpap1.S, rpap1
Name
(RefSeq) RNA polymerase II associated protein 1 S homeolog
  KO
K20826  RNA polymerase II-associated protein 1
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    431804 (rpap1.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     431804 (rpap1.S)
SSDB
Motif
Pfam: RPAP1_C RPAP1_N
Other DBs
NCBI-GeneID: 431804
NCBI-ProteinID: NP_001084769
Xenbase: XB-GENE-976778
UniProt: Q6NRI6
Position
8S:complement(5563930..5598576)
AA seq 1421 aa
MLSRPKAGESEEDLLQFQHQFLAAKTSAAAQLVRKADKRKGDDGKSAKLSPQAAGGRDVV
TLQEFPDLPPILTPGPTKKSKFAREKVRFADEDPEEILEQHDQHITTVFSKIIERDTSGV
PIIAPVSTGLPFPKVFHRSQVPSQDLPCAAKKSIFAQQMAARRAAEQTKEGSLSSPQIPP
CSLTGPTSVLPSNVIKPTPLADAMEVEKSTLIIGQGLGISAGQDEAQKIHEENMKKLRSM
SNEEKMQEQEILLSQLDPKLVDFLKSKKGKKSTDGHSSSVQASQEPQTVHLEEPQYLSED
DTSGMSPSGEKEIAVSAGHLPVKPQKEWVHMDTVEFEKLEWMKDLPLTKQSKTKKGMQAR
FSLKGDLIPPNSEIPTHMGLHHHGEEAERAGYSLQEFFHLSRSQFIQQRTLSLQVLGHIV
QKAKQGEFSAALKGSVLQLLLDAGFLFLLRFSIDDTAENVIAAAVRALRSLLVSPEDEEY
LDMTFLWYQGATVFPFLPNEESEDEEEEEVEEGLEQMMGKEERKKVKEEKKSDPDVARYD
VIKGLLKTKLLHRLRYILEVVRPAPHVVLDIFDILTYVARHSMAACSQLLDCPRLIETVV
QEFLPIQWSMQVHTGDLGPTNLYGIPCSAAMKFLRVLGSSGRHAAARLLHKFDLKKRLSR
FVAQEPQDLPLQKEEAERMSMETFRMWAVAAGYGQACDLYRELYPVLMGFLQSLPHLIFT
CRGGNKMSTIFIQRAASVLTLLTRITQTAGWTAEIEAQLRSFQEENKEQTPPPSVSWDQV
TGLLLSVEGCLRKCLEEVSSPSTWDMVKPLATASLNFVASYYQAASRQPSLDTVICNEEL
ERLTAEVLLPFLHHPAAASMWDLLRSCSAVCNPGSCAPLPESVPSIVTLGCTGGKTALAG
TQSPFPVLTSVLNLVCNICNIHKGMASKFAFLLESKGLLDYLWQICEAPSPAVTPSSAWV
LRHEYHLQYYVLSLKNKVASLCPDGCHHASVFHSVSVSLLSRLLPGSEYMAYQLISGFTF
SPSFLPEGAAGGPEAADLADILHITPNAKNEPPKSGAYPASSPSRGVLLKEAYKDLPAIR
ACYLAHLSHMEQDLSRSKFIYQERTCSLQSAMLPETRGPILPFDWPFLPLINLYNKVTNA
ETRGNIVNTLPPDLVNKITRNLQWLLLLESWRSGCLKNIPTAAKLARIACVFLTGGDLFL
EGSVHTYTTAILMLYSQNKCLESLNLDVPIPGLASFYDFYMDLLEQFEGVSFGDPLFGTF
VLLPLQRRFSVQLKQAVFGECVSCLRSLSVSLKELPVPLALYTSPCENNLHLLHLYFRTL
VTGALRQTWCPVLYVVAVAHVNNFIFSQDRVAQEVDAARKSFLRKIDLLVDKDLRRHLLF
YKQLSGESPVGFDLYEQLPPIRERYLKTTTEKHHEAKGEND
NT seq 4266 nt   +upstreamnt  +downstreamnt
atgctgtctcgtcccaaggccggggagtctgaggaggatctcctccaattccagcatcag
tttcttgcagccaaaacctctgcagctgcccagctagtgaggaaggctgataaaaggaaa
ggggatgatgggaaatctgcaaaactgtcacctcaggccgcagggggcagagatgttgtg
acacttcaggaattccctgacttacccccaattctgactcctggacccaccaagaaatcg
aagtttgcaagagaaaaggttagatttgctgatgaagacccagaagaaatcttggagcag
catgaccagcatatcactaccgtcttttcaaaaatcattgaaagagataccagtggagtc
ccaatcatagcacctgtttccactggactaccatttcctaaggtgtttcaccggtcacaa
gtcccaagtcaggatttaccctgcgctgccaaaaaaagcatctttgcccagcaaatggct
gccaggagagctgctgagcaaacaaaggaagggtcactttctagccctcagatacctcct
tgttctttgactggtcccactagtgttttgccctctaatgtgattaaaccaacaccactg
gcagatgcaatggaggtagaaaaatctactctgattattggacagggtctgggaatctcg
gcaggtcaggacgaagcacagaagatccatgaggagaacatgaaaaagctgagatctatg
tctaacgaggagaaaatgcaagaacaggaaatactgctgtcacagcttgacccaaagttg
gtggacttcttgaaatcaaagaagggaaagaaaagcactgatggtcattccagcagtgtt
caagcatcacaggaaccccagactgttcacttagaagagccacaatatctttcagaagat
gatacctctggaatgagtccaagtggagagaaagaaatagcagtttcagcaggtcatctc
ccagtgaagccacagaaggaatgggttcacatggacactgtggagtttgagaaactggaa
tggatgaaggatcttccgctgaccaagcaaagtaaaacaaagaagggaatgcaggcaaga
ttcagcctgaaaggggatttaattcccccaaattctgagatcccaactcacatggggttg
caccatcatggagaagaggccgagagagctggttattccctccaggagttttttcatctt
tcccgtagtcaatttatccagcagaggactctgtcactgcaagttctaggacatattgtt
caaaaggccaaacagggagaattcagcgctgcactgaaggggagtgtcctgcaactgctt
cttgatgctggttttctcttccttctgcgcttttctatagatgatacagcagaaaatgtt
attgcagctgcagtccgtgctctgcgttctctgttggtgtcacctgaagatgaggaatac
cttgatatgaccttcttgtggtaccaaggagccactgtctttcccttcctacccaacgaa
gaatcggaagatgaggaggaggaagaagtagaagagggtttggaacagatgatgggaaaa
gaagaaaggaaaaaagtaaaagaggaaaaaaagtcagaccctgacgtagcacgttatgat
gtcataaagggactgctaaagaccaagctccttcaccgacttcgctacatcctagaagtg
gttcggccagcacctcatgtggttctggacatttttgatattctcacttatgttgccaga
cattcgatggcagcttgtagtcagctcctggattgtccaagattgatcgagacagttgtg
caggaatttcttcctatacaatggagtatgcaagttcatacaggtgacctaggccctact
aacctatatggaattccatgctctgctgccatgaagtttttgcgggttcttggatcttcg
ggtcgtcatgcagctgcaagattgctgcacaaatttgacttgaagaagcgcctcagtaga
tttgttgctcaggagccacaagatctgcctctacagaaagaggaggctgagaggatgagc
atggagacctttcggatgtgggctgtggctgctggttatggccaagcctgtgatttatac
agagagctgtaccctgtgcttatggggtttcttcagtcccttcctcaccttatcttcacg
tgcaggggaggcaataaaatgtccactatctttatccaacgagctgcatctgtgcttact
ctgctaacgcgcataactcaaacggcaggatggacagctgagattgaggctcaacttcgc
agtttccaagaagaaaacaaggagcagactcctcctccgtctgtatcatgggatcaggtg
actgggcttttactctcagtagaaggatgtctaagaaaatgtctggaagaagtttccagt
cctagcacctgggatatggtcaagcctctcgccacagcatctcttaactttgtagcttct
tattatcaagcagccagcagacagccctcactggacacggtgatatgtaatgaagaactc
gagagattaactgctgaggtgctgttaccatttctacatcatcctgccgcagcttctatg
tgggaccttctcagatcatgttcagctgtttgtaacccaggttcctgcgccccactgcca
gagtctgtccccagtattgtgactttgggatgcactggaggaaaaactgcactggcagga
acacaatctccttttcccgttctgacttcagttcttaaccttgtctgcaacatttgtaac
atccacaagggaatggccagcaagtttgcctttctattggaatccaaagggctgctggat
tatttatggcagatttgcgaggccccatctccagctgtgactccttcttctgcttgggtt
ctgcgacatgaatatcacctgcaatattatgtgttatctctgaaaaacaaagtggcttcc
ttatgtccagatggttgccatcatgcctccgttttccacagtgtctctgttagtctattg
agtaggctgctgcctggcagtgaatatatggcttatcaactcatttcaggattcaccttc
agcccatccttccttccagaaggagcagcaggaggccctgaagcagctgacttggcagat
attttacatatcactcccaatgcaaagaacgaacctcctaaatcaggggcataccctgct
tctagtcccagccgaggtgttcttcttaaagaagcctacaaagaccttcctgctattcga
gcttgctacttagcgcacttatctcatatggaacaagatctcagtcggtcaaaattcatc
tatcaggaacggacttgttctcttcaatctgccatgcttcctgaaaccagaggacctatt
ttgccttttgattggccctttctcccactgatcaatctttataataaagtgactaatgca
gagacaaggggcaatatagtgaataccctccctccagatctagtgaacaaaatcacaaga
aacctgcagtggctcctcctcctggaaagctggcgttctggatgcttaaagaacattccc
actgcggccaagttagctcgcatagcctgtgtctttctcactgggggagaccttttctta
gaagggtctgtccacacatatactactgccatattgatgctttacagccagaataagtgt
ttagagtccctaaatttagatgttcctattcctggcctggcttcattttatgatttctac
atggaccttctagaacagtttgagggggtgtcctttggcgaccccttatttgggacattt
gtcttacttccattgcagcggcgtttcagtgtacaacttaagcaggctgttttcggagag
tgtgtgagctgcctgagatcgctctctgtatccctaaaagagttacctgtcccccttgcc
ttatacacttccccttgtgagaataatctgcatctccttcatctctacttccgaacccta
gtgacgggggctctgcgccagacctggtgtcctgttctatatgtcgtggctgtagctcac
gtgaataacttcatcttttcacaagaccgagtggctcaggaagtcgatgctgcaagaaaa
agctttctcagaaagatcgatctactggttgacaaggatttacggagacatctcctgttc
tacaaacagctgtccggtgagagtcctgtgggatttgatttgtacgagcagctgccccca
atacgagagcgctatctgaagactacaactgaaaagcaccatgaggcaaaaggggaaaac
gactaa

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (44)   

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