KEGG   Xenopus laevis (African clawed frog): 494657
Entry
494657            CDS       T01010                                 
Symbol
wdr82.L, mst107, swd2, tmem113, wdr82, wdr82-a, wdr82-b, wdr82a
Name
(RefSeq) WD repeat-containing protein 82-A
  KO
K14962  COMPASS component SWD2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    494657 (wdr82.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    494657 (wdr82.L)
   03036 Chromosome and associated proteins [BR:xla03036]
    494657 (wdr82.L)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     494657 (wdr82.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     494657 (wdr82.L)
    COMPASS/SET1 complex (yeast)
     494657 (wdr82.L)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Nup160 Nucleoporin_N MinC_C MIOS_WD40
Other DBs
NCBI-GeneID: 494657
NCBI-ProteinID: NP_001087972
Xenbase: XB-GENE-6255612
UniProt: Q640J6 A0A974HPZ4
Position
4L:127321476..127332766
AA seq 313 aa
MKLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISASLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaaactcaccgatggtgtgctccgaagttttcgagtggcaaaggtcttccgggaaaac
tctgataaaatcaactgcttcgactttagtccaactggtgaaacggtgatatccagtagc
gatgatgattcaattgtgctttatgattgccaggagggaaagcccaagaggaccttgtac
agtaaaaaatatggcgttgacctaatcagatatacacatgcagctaacacagtggtctac
agctccaacaaaattgacgacacaataagatacctctctcttcatgataataaatacatc
cgttatttccctggacatagcaagagagtagtagctttgtctatgtctcctgtcgatgat
acattcatttctgcatcattagataaaaccatccggctatgggatcttcggtctcctaac
tgccagggtctaatgcatcttcaagggaaaccagtgtgctcatttgaccccgagggtctt
atttttgcagctggagtaaattcagagatggtcaagttgtatgatcttcgctcttttgat
aaaggtccatttgcaaccttcaaaatgcagtatgatcgaacctgtgagtggacttctctg
aaattcagccaagacgggaaacttattttaatgtcgactaatgggggcttccttcgtctg
gttgatgcttttaagggggctgttatgcacacgtttgggggctacaacaatagtaaggct
gtcactctggaagcttccttcactccagattcccaatttattatgattggctcagaagat
ggcaaaattcatgtttggaattgcgaaagtgggatgaaagtagcagtactggatggaaag
cacacaggtcctatcacatgcctgcagtttaatcccaaattcatgacatttgcaagtgct
tgctcgaacatggctttttggctaccaactattgatgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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