KEGG   Xenopus laevis (African clawed frog): 495262
Entry
495262            CDS       T01010                                 
Symbol
vps11.S, vps11
Name
(RefSeq) VPS11, CORVET/HOPS core subunit S homeolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04140  Autophagy - animal
xla04148  Efferocytosis
xla05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:xla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    495262 (vps11.S)
   04148 Efferocytosis
    495262 (vps11.S)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    495262 (vps11.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    495262 (vps11.S)
Membrane trafficking [BR:xla04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    495262 (vps11.S)
   Hops complex
    495262 (vps11.S)
SSDB
Motif
Pfam: VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 zf-RING_5 zf-C3H2C3 zf-RING_UBOX zf-RING_11 zf-HC5HC2H DLP_helical zf-RING-like zf-ANAPC11 zf-C3HC4_3
Other DBs
NCBI-GeneID: 495262
NCBI-ProteinID: NP_001088406
Xenbase: XB-GENE-922534
UniProt: Q5XGW5
Position
7S:70498501..70522176
AA seq 914 aa
MAAYLQWRRFVFFEKEQVRVPGEGGSLLTMPTGLTVCDSGRGSLIFGDMTGNIWFLPRSL
QLTSFQAYKLCVTHLHQLKQHNILVSVGEDEEGINPLVKVWNLEKRDGGSPLCTRIFPAI
PGNKPTVVSCITVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILQEGSYPVTGMAFR
QTGKTTHLFVVTTENVRSYELTQKDYPYAELESHGCGLRCSALSDPSQDLQFVVASNECV
YLYQPDERGPCFAFEGQKMIVHWYRGYLIIVSSDRLPFAGRAGDCQAIDRQTLTIYDLSN
KLIAYSSPFTEVVDVLAEWGSLYVLTRDGLLHALHEKDTPTKLEMLFKKNLFVMAISLAK
SQHLDSDGLSEIFRQYGDHLYNKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHNLTA
YLQALHLQSLANADHTTLLLNCYTKLKDSARLEEFIKASEGEVHFDVEIAIKVLRQAGYH
SHALYLAEKHAHHEWYLKIQLEDIKNFQAALQYIGRLPFPQAESNMKRYGKTLMCHVPND
TTQLLNNLCTSFPQNGEGSRANPEEFIPIFANNPSELKTFLEHMIKEHSDSPQGVYDTLL
ELRLQNWAHELDPQLKNQLHDDAISLLKSGRFKNVFDKALVLCQMHNFQNGVLYLYEQGK
LFQQIMHYHMQNDQYQKVIEACERYGDQETCLWEQALSYFARKEEDCKEYIAMVLGHIEN
RNLMPPLLVVQTLAHNSTATLSVIREYLINKMQKLSQKIEEDERTVHHYREDTARIRREI
QEIRTSPKIFQKTKCSICSSSLELPSVHFLCGHSFHQHCFESYSENDVDCPTCLPENRKV
LDMIQAQEEKRELYDQFQHQLKHSSDGFSVVADYFGRGVFNKLTLITDAPTGRSGMSKEA
GLQRELLINTKRKA
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggcggcttacttacagtggcggcgtttcgttttctttgagaaagagcaggtgcgggtt
cctggtgaaggtggaagtctgctcaccatgcccactggtttgactgtgtgcgactctgga
cgtggcagccttatcttcggagatatgacaggaaatatatggttccttccccgctctctg
cagcttacctcttttcaggcatacaaattgtgtgtaactcatcttcaccaactgaagcag
cacaacatactggtttctgttggagaggatgaggaaggaatcaatccactggtaaaggtt
tggaacctggaaaagcgagatggtggaagcccactttgcacaagaatctttccagccatt
cctggtaataaaccaaccgtggtgtcatgcatcacagtccacgagaacctcaacttcatg
gcaattggctttgctgatggaagtgttgtccttaccaagggtgatataacacgcgatcga
cacagtaagactcagatcttgcaagagggtagttacccagttacaggaatggcgttcaga
cagactggtaaaaccacacacctctttgtggttaccacagaaaatgtgcggtcatatgag
ctgacacaaaaggattacccatatgcagaactggagtcccatggctgtggcctgaggtgc
tccgccctgtctgatccttctcaggacttgcaatttgtggtggccagtaatgaatgtgtg
tatttatatcagccagatgagaggggaccttgcttcgccttcgaagggcaaaagatgatt
gtgcactggtatcgaggatatctcattattgtatcaagtgacagattaccatttgctgga
cgtgcgggggattgccaggcaattgataggcaaacactgactatatatgacctgagcaac
aagctgattgcctacagcagtcctttcacagaggttgtggatgttctggcagagtggggt
tccctgtatgttttgacacgtgacggactcctgcacgctttacacgaaaaggacacgcca
accaaattggagatgctgtttaagaagaatctctttgttatggccatttctctagcaaag
agccagcatttagatagtgatggcctgtctgagatctttcgtcagtatggagatcacctt
tacaacaagggagaccatgatggagctatccagcagtatattaggacgattggtaagcta
gagccctcttatgtgattcgcaaatttctggatgctcagaggatacacaatttgactgca
tatcttcaggctttgcatctgcaatctcttgccaatgctgaccacacaacattgctgttg
aactgttacaccaaactaaaggacagtgcccgcctagaggagtttattaaggccagtgaa
ggagaggtacatttcgatgtagaaatagccataaaggttcttcgacaagccgggtatcac
tctcatgccctctaccttgcagagaagcacgcccatcatgagtggtacctgaagattcaa
cttgaggacattaagaattttcaggcggcacttcagtacattggacgtcttcccttccct
caagctgagagtaacatgaaacgctatgggaagacccttatgtgtcacgtacccaacgac
accacccagttactgaataatctgtgtactagtttccctcagaatggtgagggtagcagg
gccaatcctgaggaatttattccaatttttgctaacaacccttcggagctgaagaccttt
cttgagcacatgattaaggagcacagtgactcccctcagggagtctatgacacactgtta
gagctgcgcttgcagaactgggctcacgagttggacccacagttaaagaatcaacttcat
gatgatgctatatccctactgaagagtggccgcttcaagaatgtgtttgataaggctcta
gtcttgtgccagatgcacaattttcagaacggagttctgtatctatatgagcagggtaaa
ctcttccagcagatcatgcattatcacatgcagaacgatcagtatcagaaagtaatagaa
gcctgtgagcgatatggagatcaggagacctgtctttgggagcaggcacttagctacttt
gccagaaaggaagaagactgcaaggaatacattgccatggttttggggcacattgagaac
cggaacctcatgccaccactgttggtggtccaaaccctggcacataactccactgccacc
ctgtctgttattcgtgagtatctgatcaacaaaatgcagaaactgagccagaagattgag
gaggatgagagaacggtgcatcactaccgcgaggataccgcacgcattcgccgagaaata
caagaaatccgcaccagccccaagattttccagaagacaaagtgcagtatatgtagcagc
agtcttgagctgccatctgtgcatttcttgtgtggtcactccttccaccaacactgcttt
gaaagctattcagaaaatgatgtggactgtcccacctgcctgcctgaaaatcggaaagtc
ttagatatgatccaggcacaggaagaaaagagagaactttatgaccagttccaacaccag
ttaaagcattccagcgatggatttagtgttgtggcagattattttggtcgtggtgtgttc
aacaagctgacactcataaccgatgcacccactgggagatcgggaatgtcaaaggaagcc
ggactgcagagggaacttctgatcaataccaagaggaaagcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (61)   

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