KEGG   Xenopus laevis (African clawed frog): 733281
Entry
733281            CDS       T01010                                 
Symbol
supt5h.S, spt5, spt5h, supt5h, tat-ct1
Name
(RefSeq) SPT5 homolog, DSIF elongation factor subunit S homeolog
  KO
K15172  transcription elongation factor SPT5
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    733281 (supt5h.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    733281 (supt5h.S)
   03019 Messenger RNA biogenesis [BR:xla03019]
    733281 (supt5h.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     733281 (supt5h.S)
  RNA polymerase I system
     733281 (supt5h.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     733281 (supt5h.S)
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF3912 DUF6406 Ribonuc_P_40
Other DBs
NCBI-GeneID: 733281
NCBI-ProteinID: NP_001089092
Xenbase: XB-GENE-1013286
UniProt: A1L1H7
Position
8S:87200657..87240430
AA seq 1083 aa
MSDSEDSNFSEEESDRSSEAEEVEENEEVEEERASPAASEKGEEEVEEEDEEEYDEEEEE
EDDDRPRKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKAEELEASNIDNVVLDEDR
SGARRLQNLWRDQREEELGEYYMKKYAKSSVGEHIYGGSDELSDDITQQQLLPGVKDPNL
WTVKCKIGEERATAIALMRKFIAYQFTDSPLQIKSVVSPEHVKGYIYVEAYKQTHVKQAI
EGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPS
QNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFRRPPQKHFNAEKIRSLGGDVSSDGDFL
IFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGVDLEVVTETTGKEREHS
LQPGDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDLLEFPAQELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGEL
VQLDPQTMGVIVRLERETFQVLNMHGKVVTVRHQAVNRKKDNRFAVALDSEDNNIHVKDI
VKVIDGPHSGREGEIRHLFRNYAFLHCKKLVENGGMFVCKTRYLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHPSGGGPRGGGGGGGAAGRGRGRRDNDLIGQTVRISQGPYKGYIGV
VKDATESTARVELHSTCQTISVDRQRLTTVGARRSGGMTSTHVRTPIYGSQTPMYGTGSR
TPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEEYDYRYDDE
PSPSPQGYGGTPNPQTPGYPDVPSPQVNAPYHPQTPGTPAMYNTDQFSPYAAPSPQGSYQ
PSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPMGYSPMTPGAPSPGGY
NPHTPGSSIEQISSDWVTTDIQVKVRDTFQDSQVIGQTGIVRSVTGGLCSVLLQDSEKVI
SISGDHLEPVTPTKNSRVKVILGEDREATGVLLSIDNEDGIVRMDLEEQLKILNLHFLGK
LES
NT seq 3252 nt   +upstreamnt  +downstreamnt
atgtcagacagcgaagacagcaacttttctgaagaggagagtgataggagcagcgaggct
gaagaggtagaggaaaatgaggaggtggaggaggagagagccagccctgcggccagtgag
aaaggggaagaagaggtagaggaagaggatgaggaggaatatgatgaggaggaagaagag
gaagatgatgatagacctagaaagaaaccacgtcatggagggtttatccttgatgaggcc
gatgttgatgatgaatatgaagatgaagatcagtgggaagatggtgctgaagatattctg
gagaaagctgaagaacttgaagcatctaatattgacaatgtggtactggatgaggatcgc
tcaggggctcggcgccttcagaacttatggcgagaccagcgagaagaagagctgggagaa
tactacatgaaaaaatatgccaagtcttctgtgggagaacacatatatggtggttcagat
gaactgtctgatgacattacccagcagcagctgctccctggtgtcaaagatcctaatctg
tggactgtaaaatgtaagattggagaagaacgagctacagctattgctctgatgcgcaaa
tttatcgcctaccaattcaccgattcacctcttcagataaagtctgtagtttccccagag
cacgtgaagggttacatctatgtggaggcttacaaacaaacacacgtaaagcaggccatt
gaaggcattggcaacctgcgtatgggcttctggaatcagcaaatggtacccattaaggaa
atgacagatgtcctaaaagtagtgaaggaggtgaccaatctaaagcccaaatcttgggta
aggctcaagagaggcatctacaaggatgatattgcccaggttgattatgtagagccaagc
cagaatacaatctccttgaaaatgattcctcgaattgactatgaccgtatcaaagctcga
atgagtctgaaagattggtttgcaaagagaaagaagtttcgaagaccaccccaaaaacat
ttcaatgctgaaaaaatcaggtctctgggcggagatgtctcttctgatggagattttctc
atttttgaggctaatcgttacagccgaaaaggtttcctattcaaaagctttgccatgtct
gctgtgatcacagaaggtgttaaacccaccctttcagaattagaaaagtttgaggatcaa
cctgagggagttgatttggaagtggtgactgaaacaacaggcaaagagagagaacacagc
ttgcagccaggggacaacgtggaagtgtgcgaaggggagttgataaacttacaaggaaaa
gtactcagtgtggatggaaacaaaatcactattatgcctaaacatgaagaccttaaggac
ttgctggaatttccagcccaggaacttcggaagtatttccgaatgggagaccatgtgaaa
gttattgctgggcgttatgaaggggatacaggactgattgtacgcgtggaagagaacttt
gtcattctgttctctgatctcactatgcatgaattaaaggttctacctcgagacttacag
ttatgttcagaaactgcttcaggagtagatgttggtggccagcatgaatggggtgagctg
gtgcaactagatccgcagaccatgggagtcattgtgcgtctggaaagagagacctttcag
gtcctgaacatgcatggtaaagtggttactgttcgacaccaagctgtcaacaggaagaag
gacaatcgttttgctgtggcccttgactccgaagataataatattcatgtgaaggatatt
gtaaaagtcatagatggtccacattcgggtcgtgagggagaaatccgccatctgttccgg
aattatgcctttctgcactgtaaaaaactggttgagaatggcggcatgtttgtgtgcaaa
acgcgttacctagttctagcaggaggttccaagcctcgagatgtcacaaacttcacagtt
ggaggatttgctccaatgagccctaggatcagcagtccaatgcatcccagtggtggagga
ccacgaggtggtggaggaggcggtggagctgctggtagaggacggggccgtagagacaat
gatttgattggtcagactgtaagaatctcacaaggtccctataaaggatacattggggtt
gtaaaggatgctactgagtcaacagctagagtagaacttcattccacgtgccaaacaata
tctgttgaccgacaacgcctcaccaccgttggtgctcgccgttctggaggaatgacctct
acacatgttcgcaccccaatatatggctctcagactcctatgtatggtacaggttccagg
acacctatgtatggatcgcagactccgctgcacgatggaagccgcacaccccactatgga
tctcaaacccctctgcacgatgggagcagaaccccagctcagagtggtgcttgggacccc
aacaaccccaacacgccatcaagggcagatgaagaatatgattatagatatgatgatgag
ccttccccgtcaccacaggggtacggtggaacacccaaccctcagactccagggtatccc
gatgttccctccccacaggtcaatgctccgtatcaccctcagacacctggtactcctgca
atgtataatacagaccagttctcaccatatgctgcaccctcccctcaaggatcttaccag
cccagccctagtccacagagttatcaccaagtggccccaagtcctgtgggctaccaaaac
acccactcaccagccagctaccatccaacaccgtcaccaatggcataccaggcaagtcct
agcccaagcccaatgggttatagtccaatgacacctggtgctccctcaccagggggatac
aaccctcatacccctggctcatccatagagcagatttccagtgactgggtgaccacagac
attcaagtaaaagtcagagacactttccaggatagccaggtgataggccagactgggatt
gttcgcagcgtaacgggtggtctctgctctgtgctcctgcaagacagcgaaaaagtaata
agtatctctggtgatcacttggagccagtcacccctactaagaacagcagggttaaagtt
atactaggagaggaccgtgaggctacaggagtcctactcagtatagataatgaggacggt
atcgttcgaatggatctcgaagaacagctgaagatccttaaccttcactttctggggaag
ttggagtcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (54)   

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