KEGG   Xiphophorus maculatus (southern platyfish): 102217946
Entry
102217946         CDS       T02923                                 
Name
(RefSeq) THO complex subunit 4-like isoform X1
  KO
K12881  THO complex subunit 4
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03013  Nucleocytoplasmic transport
xma03015  mRNA surveillance pathway
xma03040  Spliceosome
xma05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102217946
  09122 Translation
   03013 Nucleocytoplasmic transport
    102217946
   03015 mRNA surveillance pathway
    102217946
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102217946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xma03019]
    102217946
   03041 Spliceosome [BR:xma03041]
    102217946
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102217946
    TREX complex
     102217946
Spliceosome [BR:xma03041]
 Complex C
  Other components
   EJC/TREX
    102217946
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102217946
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 102217946
NCBI-ProteinID: XP_005807077
Ensembl: ENSXMAG00000012218
Position
16:complement(16579737..16584088)
AA seq 269 aa
MADKMDMSLDEIIKQNRQQRGGGRGGRGRGRGGRVGLGGGRGGGPGRLGGGGGGGFGGRG
GGSGPMRNRQNLNRARGRPTPYSRPKQLPDKWQHDMFDTGFGGFNGSAGGGGGAGVETGG
KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQY
NGIPLDGRPMNIQLVTSQIDTQRRPMQGLVVVGGMNRNRTFGMQRGRGGRGSAFFRGRGR
GGRGGGSKPLSAEELDAQLDAYNARMDTS
NT seq 810 nt   +upstreamnt  +downstreamnt
atggccgataaaatggatatgtctctagatgagattatcaagcagaacaggcagcagaga
ggtggaggccggggaggaagaggccgcggccgaggcggccgtgtgggcctaggcggcggc
cgaggcggaggccctgggcgacttggaggcggcggcggtggaggatttggaggccgaggc
ggcggatccggccccatgaggaatcgacagaacctgaaccgcgctagaggcaggccgacg
ccttacagcaggcctaaacagctccccgacaagtggcagcacgacatgttcgacaccggc
ttcggaggctttaatggtagtgctggtggtggcggaggagctggtgtggaaactggaggg
aagctcctagtctccaatctggactttggtgtttcagatgcagacattcaggaacttttt
gctgaatttgggactctgaagaaggctgccgttcattacgaccgctcaggaagaagcctg
ggaacagctgatgtccattttgagaggagagcagatgcactgaaggccatgaagcagtat
aatggcatcccacttgatgggcgaccaatgaacattcaactcgtcacgtcacagattgac
acacagaggcggcctatgcaggggctggttgtagttgggggcatgaacagaaatcgcacc
tttggcatgcaaagaggtcgaggtggccgtggttcagctttcttcagagggagaggacgg
ggtggccgaggtggcggaagcaaaccgctttcagcagaggagcttgatgcacaattagac
gcctacaacgccaggatggacaccagttaa

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