KEGG   Xiphophorus maculatus (southern platyfish): 102221917
Entry
102221917         CDS       T02923                                 
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X4
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xma00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    102221917 (ddx3x)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xma03019]
    102221917 (ddx3x)
   03041 Spliceosome [BR:xma03041]
    102221917 (ddx3x)
   03036 Chromosome and associated proteins [BR:xma03036]
    102221917 (ddx3x)
Enzymes [BR:xma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102221917 (ddx3x)
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102221917 (ddx3x)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102221917 (ddx3x)
Spliceosome [BR:xma03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    102221917 (ddx3x)
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    102221917 (ddx3x)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 102221917
NCBI-ProteinID: XP_014326014
Ensembl: ENSXMAG00000006761
Position
7:complement(4274387..4290207)
AA seq 700 aa
MSHVVVDNPHGLDQQLAALDLNPDGQGGGTGRRYIPPHLRNKDAAKNDSPGWDGGRTNGF
VNGFHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFNQPLQNTGFGGYENKDGGWGGA
PRDAAYNSFGGRNDRSKSAFFNDRGAGSRGRYERGGFGGGGNSRWVEDSRGEDDWSKPTA
PNERLENELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVDMGEIIMGNITLTRYT
RPTPVQKHAIPIIKIKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGDALQASKSSGQEN
GRYGRRKQYPISLVLAPTRELALQIYDEAKKFAYRSHVRPCVVYGGADIGQQIRDLERGC
HLLVATPGRLVDMMERGKIGLDHCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQ
TMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNA
TGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVA
TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLL
DILVEAKQEVPSWLESLAYEHQHKSTSRGRSKRFSGGFGARDYRQASGGSGGFNSNRSGR
NAGGHGGSRGFGGGGFGGNFYNDGYGGNYNHSGSVDWWGN
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgccctagac
ttgaaccctgacggtcaaggcggaggaactggcagacgctacattccacctcacctgagg
aacaaagatgctgcaaaaaatgattcacctggatgggacggaggacgcaccaacggattt
gtgaatggtttccatgacaaccgtacaaatgggggttttggagggcgcggaccccctcgc
aatgatagaggtgggcgtggcgcctaccgtggtaacaggggcggaggctcgtttaatcaa
ccattgcaaaatacaggttttggaggctacgaaaacaaagacggaggctggggaggagct
cctagagacgccgcctacaacagctttggagggcgcaacgatcggtccaagtctgcgttc
ttcaacgaccgtggggctggctccagaggaagatacgagcgcggggggttcggtggtggt
gggaacagccgctgggtggaggactccagaggagaagatgactggtccaagcctactgca
cccaatgagcgtctggaaaacgagcttttctctggaagcaacacggggataaactttgag
aaatacgacgatattcccgtggaggcgactggaagcaactgcccaccacacattgagagt
tttcatgatgtggacatgggggagatcatcatggggaacatcaccctgacccgctacacc
cgaccaactccggtccagaagcacgccattcccatcattaagattaagagagacctgatg
gcctgcgcccagacgggttctggtaaaaccgctgctttcctgttgccggttctgagtcag
atctacacagaagggccaggagatgcactgcaagcctcaaagagtagtggacaggagaat
ggacggtacggccgtcgtaagcagtaccccatctccctcgttctggctccaaccagagaa
ctggctctgcagatctacgatgaggccaagaagttcgcctaccgctcccatgtacgtccc
tgtgtggtgtacggcggcgccgacatcggccaacagatccgggacctggaaagaggctgc
catctactggtagccacaccgggacgtctggtggacatgatggagagaggcaagatcggt
ctggaccattgcaactacctggttctggacgaggctgaccgcatgttggacatgggcttt
gagccgcagatcagacgcatcgtggagcaggacacgatgccgcccaagggcatccgccag
accatgatgttcagcgccaccttccccaaagagattcagatccttgctcgtgacttcctg
gaggactacatcttcctggcagtggggcgcgtcggttccacatcagagaacatcacacaa
aaggttgtctgggtagaagagaacgacaagaggtctttccttctggatctgctcaatgcc
acaggtaaagactccctgaccctggtctttgtggaaacaaagaaaggagctgatgctctg
gaagacttcctgtaccgcgagggctacgcctgcaccagcatccatggagacagatctcag
agggacagagaagaagctctgcaccagttccgctctggacgctgcccaatcctggtggct
acagctgtggctgctcgaggtctggacatcagcaacgtgaagcacgtgattaactttgat
ctgcccagcgacattgaggaatacgttcaccgtatcggccgtacgggacgtgtgggcaac
cttggtctggccacgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctg
gacatcctggttgaggccaagcaggaggttccttcctggctggagagcctggcctacgag
caccagcacaagagcaccagccgcggacgttccaagaggttctctggtggtttcggagcc
agagactaccgccaggcatcgggtggctccggaggcttcaacagcaaccgctcaggacgc
aacgctggcggtcacggaggaagccgtggctttggtggaggtggcttcggcggcaacttc
tacaacgacggctacggcggaaattacaaccactctggtagcgtagattggtgggggaac
taa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (61)   

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