KEGG   Xiphophorus maculatus (southern platyfish): 102222739
Entry
102222739         CDS       T02923                                 
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03008  Ribosome biogenesis in eukaryotes
xma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102222739 (xrn2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102222739 (xrn2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xma03021]
    102222739 (xrn2)
   03019 Messenger RNA biogenesis [BR:xma03019]
    102222739 (xrn2)
   03009 Ribosome biogenesis [BR:xma03009]
    102222739 (xrn2)
   03016 Transfer RNA biogenesis [BR:xma03016]
    102222739 (xrn2)
Transcription machinery [BR:xma03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102222739 (xrn2)
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102222739 (xrn2)
Ribosome biogenesis [BR:xma03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102222739 (xrn2)
Transfer RNA biogenesis [BR:xma03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    102222739 (xrn2)
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC zf-CCHC_2
Other DBs
NCBI-GeneID: 102222739
NCBI-ProteinID: XP_023203217
Ensembl: ENSXMAG00000000242
Position
15:5070798..5086292
AA seq 967 aa
MGVPAFFRWLSRKYPSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELTEEKNRMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLSNDPGWKNVVVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCSLCGQTGHEIKDCQGVARQKQGEHDEFAGAMPAAEQE
FIFIRLCVLREYLSRELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVSIYKDVVHKTGGYLTQNGFVNLERVELIMQAVGVAEDNIFRKRKEDDENFKRRNKE
KRKRMKAEQQGPAFMTSGQFAPQALGRRDRPEPVHNARYQAYDMRMQSVEQHNKDAAQSL
KSMMRNGGRSSAGVSDGTDRGVKRKCEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDVS
DDGFRKKVVRSYVEGLCWVLRYYYQGCASWKWFFPFHYAPFASDFRDIQEMFSEFEKDTK
PFKPLEQLMGVFPAASGNFLPPTWRNLMMSADSSIIDFYPDDFAIDLNGKKYAWQGVALL
PFVDERRLRAALADVYPDLTPEEVRRNSLGSDILFLGRSHPLFDFIHELYRSETQEEAPV
PAELCHGIQGTLNLDDNPILPDETVKSPVPLLRDISLNSSINVKFRDPQFAEGFVFKAVL
LPGAKMPSKVLKPEDYERGARGPWRPQLGFNPNRQQAHLDQAGFRALGHSLPRAQQFRGQ
YSNAAPPSSYHQGSYSRHAHSSGQQHFQHSRQNAPQRPPPSFSSVPPPFPRQQQPYRGGG
HGWDRAVQAQRSAYQQNLSRGGGGPGGYQQRYDQRQEDWGDRRDNRGQQQARGFPLPPPS
RHIRWNN
NT seq 2904 nt   +upstreamnt  +downstreamnt
atgggagttccggcttttttccgctggctgagccggaagtacccgtcgataatcgtccac
tgtgtggaggagaaggggaaggagtgtaacggcgttcgcatcccggtggacacgaccaag
ccgaaccccaacgaggtggagtttgataacctgtacctggacatgaacgggatcatccac
ccgtgcacccaccctgaggacaagcccgctccaaagaatgaggatgagatgatggtggcg
atatttgagtacatcgaccgcctgttcaacatcgtgcgccccaggcgggttctctacatg
gccatcgacggagtggctcctcgggccaaaatgaaccagcagcgctcccggcggttccgg
gcctccaaggagggggcggagctgacggaggagaagaaccgcatgagggaggaggtcatc
cagagaggaggatatcttccaccagaggagatcaaggagcgattcgacagcaactgcatc
actcctggcacagagttcatggataacctggctcagtgtctacgttactacgtggcggag
cggctcagcaacgacccgggatggaagaacgtggtggttttcctgtctgacgccagcgtt
ccaggggaaggagaacacaagatcatggatttcatcaggagacagagagctcagcccaac
cacgacccgaacacacaccactgtctgtgcggcgccgacgctgacctcatcatgctgggc
ctggccacccatgagccaaacttcaccatcatcagggaggagttcaagcccaacaagccg
cggccgtgttcgttgtgcggccagacgggccacgagatcaaggactgtcagggcgtggcg
cgccagaagcagggagagcatgatgagttcgccggcgccatgcctgcagccgagcaggag
ttcatcttcatcaggctctgcgtcctgagggagtacctgtccagagagctgaccatggcc
agcctgccgttccccttcgactttgagaggagcgtggacgactgggtcttcatgtgcttc
ttcgtgggaaacgacttcctgcctcaccttccttccctggagatcagagaaggcgccatc
gaccggctggtcagcatctacaaggacgtggtgcacaagaccggaggctacctgacacag
aacgggttcgtgaacctggagcgggtggagttgatcatgcaggcggtgggcgtggccgag
gataacatcttcaggaagcgcaaagaggacgatgagaacttcaagaggagaaacaaggag
aaacggaagaggatgaaggccgagcagcagggtccggctttcatgacctcgggtcagttc
gccccccaggccctgggcaggagggaccgtcctgagccggtccacaacgctcgctaccag
gcctacgacatgaggatgcagtcggtcgagcagcacaacaaggatgcagctcagtctctg
aagtccatgatgaggaacggaggcaggtcgtctgcaggcgtgagcgacggcacagaccga
ggagtcaaaaggaaatgtgaggacagcgacagtgagccggagcccgaagacaacgtcagg
ctgtgggaggagggctggaagcagagatactataagaccaagtttgacgtggacgtgtcc
gacgacggcttcaggaagaaggtggtgcgctcctacgtggaggggctgtgctgggtgctg
cgctactactaccagggctgcgcctcctggaagtggttcttcccgttccactacgctccg
ttcgcctccgacttcagagacatccaggaaatgttttcagagttcgagaaggacaccaag
ccgttcaagcctctggagcagctgatgggagtgtttcctgccgccagtgggaacttcctg
ccgcccacatggaggaacctgatgatgagcgcggattcctccatcatcgacttttacccc
gacgacttcgccatcgacctgaatgggaagaagtacgcctggcagggcgtggccctgctg
ccgtttgtggatgagcgccgactgagggcggctctggctgacgtttaccccgacctgacg
cccgaagaagtgcggaggaacagtctgggcagcgacatcttgttcctgggcagatctcac
ccgctgttcgacttcatccatgagctgtaccgctcagagacccaggaggaggccccggtt
ccggcagagctctgccacggcatccagggaacgctgaacctggacgacaaccccatcctt
ccagacgagacagtgaagtcgcctgttcctctactcagagacatttcactcaacagctcc
atcaatgtgaagttcagggatcctcagttcgctgaaggcttcgtgttcaaagcggttctt
ctgccgggagccaagatgcccagcaaggtgctgaaaccagaagactatgagcgaggggcc
cggggcccctggaggccccagctgggcttcaaccccaacaggcagcaggcccacctggac
caggctggcttccgggcgctgggccacagcctgcccagagcccagcagttcagaggtcag
tacagcaacgctgcaccgcccagcagctaccaccaggggagctacagccgccacgcccac
agcagcggccagcagcacttccagcattccaggcagaacgcaccgcagcgtccgccgccg
tccttcagcagcgtcccgccaccgttccccaggcagcagcagccgtaccgcggcgggggc
cacggctgggaccgggccgtccaggctcagcggtctgcgtaccagcagaacctgagccgc
ggcggggggggaccgggaggctaccagcagcgctacgaccagcgccaggaagactggggc
gaccgccgtgacaaccggggccagcagcaggccagaggattccctcttcctcctccatcc
agacatatccgctggaataactga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (42)   

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