KEGG   Xiphophorus maculatus (southern platyfish): 102225839
Entry
102225839         CDS       T02923                                 
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:xma00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xma03016]
    102225839 (trub1)
Enzymes [BR:xma01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     102225839 (trub1)
Transfer RNA biogenesis [BR:xma03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    102225839 (trub1)
 Prokaryotic type
    102225839 (trub1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 Pus10_C GAIN_A
Other DBs
NCBI-GeneID: 102225839
NCBI-ProteinID: XP_005814416
Ensembl: ENSXMAG00000014701
UniProt: M4AJT0
Position
10:24201689..24205713
AA seq 277 aa
MAGNVSGAAGPISSLSKLQSLNGLFAIYKKQGPTSADVLNKFKETLLREAGVQNPNSRKR
KKQYLKMGHGGTLDSAASGVLVVGIGNGTKKLSTMLTGSKKYVAVGELGKATDTFDATGT
VIMEKEFEHITRLDMEEKLKAFTGDIMQVPPLFSALKKDGQRLSVLLKKGHQVEAKPARP
VTVHSLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELVRMKQGQFTLQD
HVLHEEQWTLQSVVGALQPCPEEDQRMDSPRSPQIPT
NT seq 834 nt   +upstreamnt  +downstreamnt
atggctgggaatgtgagcggcgcagcgggaccaataagttctctgtctaagcttcagtct
ttaaatggcttgttcgccatatataagaaacaagggccgacatctgctgatgtgttaaac
aagttcaaagagactttgctcagagaggcgggagtgcagaacccaaacagcagaaagagg
aagaagcagtacctgaagatgggccacggagggaccctggacagcgctgccagcggggtc
ttggttgtcggtattgggaacgggacaaaaaagctcagcacgatgttgactggttcaaag
aaatacgtggctgttggagaactgggaaaagcaacagatacctttgatgccactggaacg
gtgatcatggagaaagagtttgagcacataaccaggctggacatggaggagaagttaaaa
gcttttaccggtgacatcatgcaggttcctccactcttctccgccctgaagaaagacggc
cagcgtctgtctgtgttgttgaagaaaggtcaccaggtggaggccaaacctgcacggccc
gtcaccgtgcacagcctgactctgcaggagttcaaacctcctctcttcactctcgatatc
gaatgcggtggagggttttatgtcagaagcctggtggacgacctgggaaaagctctgtcg
tcatgtgctcatgtgaaggagctggtcaggatgaagcagggccagttcaccctgcaggat
cacgtgctgcatgaggagcagtggacgctgcagagcgtcgttggggcgctgcagccctgc
ccagaggaggaccagaggatggactctcccagatccccacagatccctacctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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