KEGG   Xiphophorus maculatus (southern platyfish): 102236892
Entry
102236892         CDS       T02923                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma04510  Focal adhesion
xma04512  ECM-receptor interaction
xma04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xma00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102236892
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102236892
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102236892
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xma04147]
    102236892
   00536 Glycosaminoglycan binding proteins [BR:xma00536]
    102236892
Exosome [BR:xma04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102236892
Glycosaminoglycan binding proteins [BR:xma00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102236892
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102236892
NCBI-ProteinID: XP_023191796
Position
6:complement(13810190..13837276)
AA seq 1669 aa
MAFKVTFMMFFNSWWFIFLVIHVQLLKAGDTEGPCQGRDCSQCVCHPAKGARGPPGKPGK
QGIQGPMGQRGRVGPQGEKGTVGAAGSHGLQGPKGDRGLTGVPGFTGHEGFPGHPGAGGE
PGLPGLDGCNGTRGQPGPDGLPGLDGLHGPPGPNGAKGSKGTPNYTGALPGPPGERGIDG
DDGQTGSPGNIGPKGLRGLQGLRGPKGVEGPKGVKGSLGDPGRSPRGEIGEQGPPGPPGP
PGPEEQKGYPSEYIFHKGEKGNKGPPGPCGPKGSRSTYSPSQTGPKGEKGILGFPGDRGR
PGRSGGDGLTGHEGVPGDNGLPGLIGRIGEKGWPGDPGPPGFTQFHNGSDVRGPKGDRGY
PGAPGFPGEPGYMGIPGPPGPPGLPEAHGRPGQPGDPGEKGEKGEPGTYDPNEIHFIHGP
KGAKGHQGERGPDGCPGPQGCGNYYCEPGSPGEPGEDGPRGFSGNKGLKGVKGCPGECKC
VHALRAVGPPGPPGYPGSPGFPGAPGPQGDPGLRGNDGSRGPDGAHGFTGLKGRKGEKGD
TYVSGTKGAKGDEGEPGYAGPPGRTGEPGKDGFPGLVGEPGPPSSGYVGRPGPKGYAGPP
GPKGFPGPIGPPGPGFPGLKGEPGLQGIQGLPGLPGVPGRQGPPGETEPCCHESQIGPPG
PKGEPGLPGVQGQPGRDGYQGTPGQQGPKGIKGDDGETLTGPPGSIGVNGDPGDRGPTGL
SLDGPEGLPGLPGPHGRKGDPGHILSAWPGPIGAPGPQGAVGSYGIPGIPGHRGSPGLQG
PPGPQGHKGDPGDSGDLGDPGVQGPPCTVCELVSTPGPPGPSGRPGEQGVPGYPGQKGVK
GDVGPPGRGQKGLKGHPGIPGAPGPAGPTGVVGPQGDPGIHGLQGQKGEKGLPGKPGSRS
IPGNPGPPGQPGEKGERGFPGRYGNTGDPGFRGKKGSTGPVGVPGLCPIVNVTKGPSGFS
GRRGPPGQTGLAGYKGSTGMPGDLGPDGWPGSQGLKGFAGIPGREGLSGLRGLHGIKGFP
GPRGYSGNTGDQGDPGPAGQIGIPGLPGFPGEKGNKGQSYGRPGPQGLKGLPGEVGPSVL
RGSPGHPGDPGPRGRQGQPGHPGVAGETGRQGGPGSPGPRGLSGRQGIRGPPGDEGAVGP
PGPPGPWGNPGPPGTPGLDGLNGLRGPKGMRGADGQGTSGPRGQNGLPGAKGARGISGRA
GATIPGVKGQTGAPGNTGFPGIPGTPGRSGKVCQNPLHGSQGDRGYEGLPGPSGPPGPPG
PPGGSISYKGDSGPDGHHGPPGYKGNKGVPGPPGPHGHSGIPGPKGEKGPDGLRGLQGPK
GQQGISGPQGCKGEIGPIGDPGVKGQPGDLITVDSRVPPPGAPGPKGVSGSVGSQGYVGR
PGPFGRTGQKGPKGSVGFPGIPGPPGLDGPYGDPGDVGEQGYTGPQGAPGPPGDTGEPGH
RNQLRSGFLLVIHSQSVQVPECPAGSSQLWVGYSLIYLEGQEKAHTQDLGQPGSCLPVFS
TMPFSYCDKDACYYSSRNDKSYWLSTTAPISMMPLFDQEISLHISRCVVCETFSPAVPFH
SQDQAIPPCPDGWKSLWTGYSFLLHTGAGDEGGGQSLASSGSCLRDFRTHPFIECQGAQG
SCHYFSNLYSFWLTTVRDREEFVPVKPGTIKAADQQRHKASRCNVCLRD
NT seq 5010 nt   +upstreamnt  +downstreamnt
atggcattcaaagtaactttcatgatgttttttaactcctggtggttcattttcctggtc
atccatgtgcagctgctcaaagcaggggatactgaaggcccatgtcaaggcagagactgc
tctcagtgtgtgtgtcatcctgctaaaggtgcaaggggacctccagggaaaccaggaaag
caaggtattcagggtccaatgggacaaagaggacgagttgggcctcaaggggagaaggga
acagtgggcgcagcaggatcacatggcctacaggggccaaaaggagaccgtggtttgact
ggtgttcccggtttcacgggtcatgaaggatttcctggccaccctggagcagggggtgag
cctggtttaccaggactggatggctgtaatggaacaagaggtcaaccaggaccagatggt
ctgccaggactggatggcctccatgggccacctggaccaaatggtgctaaaggaagcaaa
ggaacacctaattatactggtgctcttccaggtcctcctggtgaacgaggtatcgatgga
gatgatggtcaaacaggaagcccagggaacattgggcctaagggtcttcgtggccttcaa
ggacttcgtgggcctaagggtgtagagggtcctaaaggtgtgaaaggatcacttggtgac
cctggaagatcgcctagaggtgaaattggtgaacaaggcccacctggaccacctggccca
cctggaccagaagaacagaaaggatatccttcagaatacattttccataagggtgaaaag
gggaataaaggtcctcctggaccatgtggaccaaaagggagtcgaagtacctacagccct
agtcaaacgggacctaaaggagagaagggaatcctgggatttccaggggatagaggtaga
cctggacggtctggcggagacggattgactggacatgagggtgtccctggagacaatgga
cttccagggctcattggaagaataggagaaaagggttggccaggggatccaggtccccct
ggttttacacaatttcataatggaagtgatgtgagaggtcctaaaggagaccgtggatat
ccaggtgcacctgggttcccaggagagcctgggtatatgggtatacctggccctccaggc
ccaccaggtttaccagaggcacatggccgacctggtcaaccaggtgaccctggtgaaaag
ggtgagaagggagaaccagggacatacgatccaaatgaaatacatttcattcatggaccc
aagggagcaaaaggacatcaaggagaaagaggccctgatggttgccctggtccacaagga
tgtggaaattattactgcgagcctggttctccaggggaacctggtgaagatggacccaga
ggattttctggaaacaaaggcctaaaaggagttaaaggttgtccaggggaatgtaaatgt
gtgcatgctttgagggctgttggtccacccggtccacctggttatccaggatcaccggga
tttccaggagctccgggacctcagggggacccaggactgaggggaaatgatggctcaaga
ggaccagatggcgcacatggtttcacaggtctaaaaggaagaaagggtgagaaaggtgac
acgtatgtgagcggtactaaaggtgcaaaaggggacgaaggagaaccaggatacgctggt
cctccagggagaacaggtgagcctggaaaagatggcttccctggtctggtgggagaacct
ggtccaccgagttctggctatgtgggacgccctggacccaaaggttatgcaggtcctcca
ggacccaaaggattccctggccccattggtcccccaggtcctggatttcctggcctaaag
ggagaacctggacttcaaggaattcagggacttccagggcttcctggagtcccaggacga
caaggtccaccaggtgaaacagagccatgctgtcatgaaagccaaattggaccaccaggg
cctaagggtgagccagggttaccaggtgttcaaggtcaacctggaagagatggctatcaa
ggaactccaggacaacaaggacctaaaggtataaagggagatgatggagaaactctgact
ggaccaccaggatctattggtgtaaatggagatccaggtgaccgtggtcccactggcctt
agcctggatggccctgaaggtcttcctgggttaccaggaccccatggcagaaaaggggac
ccaggacacatcctttcagcttggccaggtccaattggtgctcctggaccacaaggagct
gtggggtcatatggaattcctggaatccctggacatcgaggatcaccaggattacaaggc
ccaccaggaccccaaggtcacaagggagatcctggggacagtggagaccttggagatcct
ggtgtccaaggtccaccatgtactgtttgtgaactagtaagtacgcctggacctccagga
ccttcagggcgccctggtgaacaaggagtgccaggctaccctggtcagaaaggggtgaag
ggagatgttggtccacctggtcgaggacagaagggtttaaaaggtcatcctggtattcct
ggggctcctggcccagctggaccaacaggggttgttggtcctcaaggagaccctggtatt
catggcttacagggacagaaaggtgaaaagggcttgcctgggaagcctgggtctagaagt
atacctggcaatcctgggcctccagggcaaccaggtgaaaagggagaaagaggttttcct
ggtcgttatggaaatacaggtgatccaggatttcgtggtaaaaaaggctcaactggacct
gtgggagtcccaggattatgtccaattgtcaacgtgacaaaaggtccttctggattttct
ggaagaagggggcctcctggtcagacagggcttgcaggatacaaaggcagcacaggcatg
cctggcgatttggggcctgatggatggccaggatcacaaggattaaaaggatttgctggt
attccaggtagagaaggattatcaggactccgtggacttcatgggattaaagggttccca
ggtccaagggggtattctgggaatactggagatcagggagatccaggaccagcaggacaa
attggtatccctggcctcccaggatttcctggtgaaaaaggtaataaaggccaatcttat
gggagacctggcccacaaggactcaaagggttacctggggaggttgggcccagtgtactt
agaggaagtccaggacatccaggtgacccaggacccaggggaaggcaagggcaaccagga
catccaggggttgctggggaaaccggaagacaaggagggccaggctctcctgggccccga
ggtctatcagggcgccaaggcattagaggtcctccaggtgacgaaggagctgtgggacca
cctggccccccgggcccatggggcaatccaggtccccctggaacaccaggtctggatgga
ttgaatgggctgagaggtccaaaagggatgaggggagcagatggtcaaggcacttctgga
cctcgtggacaaaatggtttacctggagccaaaggcgcccggggcatctcgggacgtgca
ggggcaactattccaggggttaaaggccaaactggggcacctgggaacacaggttttcca
ggaataccaggaacacctggtagatctggcaaagtctgccaaaacccccttcatggatct
caaggagataggggctatgaagggctcccaggaccctcaggtcctcctggtccacctggg
ccaccaggtggcagcatttcatacaaaggagactcaggaccagatggccatcatggacct
ccaggttataagggaaataaaggcgttccaggacctccagggcctcatggccacagtggc
attccaggaccaaagggtgagaaaggtcctgatgggctaaggggccttcagggaccaaaa
ggtcaacagggcatctctggacctcaaggttgtaagggagaaattggcccaattggagac
ccaggtgtcaaaggtcaacctggtgatttaatcactgtagattcaagggttcctccccct
ggtgccccaggaccaaaaggcgtttcaggaagtgtaggaagtcaagggtatgtgggtcgt
cctggtccttttggtcgaacaggacaaaagggtcctaaagggtctgtgggctttcccggc
ataccaggccctcctgggttagatggtccctatggagacccaggtgatgttggtgagcaa
ggatacactgggcctcaaggtgcccctggtcctcctggtgatacaggcgagcctggccat
agaaatcaacttagatcaggctttcttttggttatccacagccagtcagttcaggtacca
gagtgtcctgcaggtagcagccagctgtgggtgggatacagtctcatctacctggaagga
caagagaaggctcacacacaagatctgggtcagcctggctcttgtctccccgttttctcc
accatgcctttctcctactgcgacaaagacgcatgctactactcaagtcgcaatgacaaa
tcctattggctttccactactgctcctatatcaatgatgccactctttgaccaggagata
agcctccacatcagccgctgtgtggtgtgtgaaaccttttcaccagcagtgccatttcat
agtcaagaccaagcaattcctccctgcccagacggctggaagagtttatggacaggatat
tccttccttctgcacacaggagcaggtgatgagggtggtggacaatctttggcttcctct
ggtagctgcctcagagattttcgaactcatcccttcattgagtgccaaggtgcacagggt
tcctgtcactacttttccaatctttacagtttttggctaactaccgtaagagatagagag
gaatttgtccctgtaaagcctggtaccatcaaagcagctgatcagcagcggcacaaggcc
agtcggtgtaatgtttgccttcgggattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (118)   
   KEGG ORTHOLOGY (1)   
   RefGene (114)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (129)   

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