KEGG T03752: XNC2

Xenorhabdus nematophila AN6/1: XNC2_0375

Entry

XNC2_0375         CDS       T03752

Symbol

rho

Name

(GenBank) transcription termination factor Rho; polarity suppressor

K03628

transcription termination factor Rho

Organism

xnm Xenorhabdus nematophila AN6/1

Pathway

xnm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:xnm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XNC2_0375 (rho)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xnm03021]
    XNC2_0375 (rho)
   03019 Messenger RNA biogenesis [BR:xnm03019]
    XNC2_0375 (rho)
Transcription machinery [BR:xnm03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     XNC2_0375 (rho)
Messenger RNA biogenesis [BR:xnm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     XNC2_0375 (rho)

SSDB

Motif

Pfam:

Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB AAA_22 AAA

Other DBs

NCBI-ProteinID:

CEK21374

Position

I:317061..318320

AA seq 419 aa
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQDELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNEEFFDFMKRS

NT seq 1260 nt +upstreamnt +downstreamnt
atgaatcttaccgaattaaagaatacgccggtatctgagttgattactctcggcgaaaat
atggggctggaaaatctggctcgtatgcgtaagcaagacatcattttctctattctcaaa
caacacgcgaaaagcggagaggatattttcggagatggtgtgctggagatattacaggat
ggatttggtttcctccgctcagcagacagctcctaccttgcaggtcccgatgatatctac
gtttctcctagtcaaatccgccgttttaaccttcgtaccggtgataccatttcagggaaa
atccgcccaccaaaagaaggtgaacgctattttgccctgctgaaagtcaatgaagttaac
tttgacaaacctgaaaatgctcgcagtaaaatcctgtttgaaaacttgactccgcttcat
gccaacaaccgtctgcgcatggaacgtggtaatggttctactgaagatttgactgcccgt
gtattggatttagctgctccgattggtcgtggtcaacgtggtttgattgttgctccgcca
aaagcaggcaagaccatgctgctgcaaaatattgcagctaacattgcccataactatcca
gactgtgttctgatggtgctgttgattgatgaacgcccagaagaagtaacagaaatgcag
cgtttggttaaaggtgaagtcattgcttcaacttttgatgagcccgcttcccgtcacgtt
caagtggctgaaatggtgatcgaaaaagcgaagcgtttagttgagcataaaaaagacgtt
attatcctgctggactccattactcgtctggctcgtgcatataacaccgttgttcctgca
tctggtaaggtgctgacgggtggtgtagatgcgaatgcgttgcatcgaccaaaacgtttc
tttggtgctgcacgtaatgttgaagaaggcggtagcctgactatcatcgccactgcgctg
gttgatactggctccaaaatggatgaagttatttacgaagaatttaaaggtacaggtaat
atggaattgcacctgtcccgtaagattgctgaaaaacgcgttttccctgctattgattac
aatcgttccggaacacgtaaagaagagctgcttactacacaggatgagctacagaagatg
tggatcctgcgtaaaattattcacccaatgggtgaaattgatgcgatggaattccttatc
aacaaactggctatgacaaaaacaaacgaagaatttttcgactttatgaaacgttcatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system