KEGG   Xanthomonas oryzae pv. oryzicola BLS256: XOC_2083
Entry
XOC_2083          CDS       T01873                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xor  Xanthomonas oryzae pv. oryzicola BLS256
Brite
KEGG Orthology (KO) [BR:xor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XOC_2083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xor03400]
    XOC_2083
Enzymes [BR:xor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XOC_2083
DNA repair and recombination proteins [BR:xor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XOC_2083
SSDB
Motif
Pfam: DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: AEQ96229
UniProt: G7TCQ1
Position
2081140..2081538
AA seq 132 aa
MAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVGYTAPKGSRSSFGALLLAA
PDPVHGWLYVGRVGSSFSDALMREITQQLEGGGGRTPTAHVATADTDLRGATWFGPRFVV
EVFYRGIGGQQL
NT seq 399 nt   +upstreamnt  +downstreamnt
gtggccggcgagcagcacttcgagggcatcatttccaaacgcgcagatcgcccgtatcgc
gacgggcgcagcgacgactggcgcaagaccaagcagctggccagccaggaatatgcggtg
gtcggctacaccgcgcccaagggcagtcgcagtagctttggcgcgctcttgttggccgca
ccggacccggtgcatggctggttgtacgtcggtcgcgtcgggtccagcttctccgatgcc
ttgatgcgcgagattacccagcaactggagggtggcggtggccgcacacccacggcgcac
gttgccaccgccgacaccgacttgcgcggcgccacctggtttgggccacgctttgtagtg
gaggtgttctatcgcggcatcggtgggcagcagttgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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