KEGG   Xanthomonas oryzae pv. oryzae PXO86: AZ54_16660
Entry
AZ54_16660        CDS       T03765                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
xoy  Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xoy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AZ54_16660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xoy03019]
    AZ54_16660
   03009 Ribosome biogenesis [BR:xoy03009]
    AZ54_16660
Messenger RNA biogenesis [BR:xoy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AZ54_16660
Ribosome biogenesis [BR:xoy03009]
 Prokaryotic type
  rRNA helicases
   AZ54_16660
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 P-loop_SecA adh_short
Other DBs
NCBI-ProteinID: AJQ84028
Position
complement(3461199..3463103)
AA seq 634 aa
MTQESSAPLLFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHQRADRGDRPRFEPKFERGPRADG
ERAPRPPRGDDAGGERPRRDPVAPRGEPELGMESYRIEVGHSHGVKPANIVGAIANEAGL
ESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPAKPRF
PRGGKPSGRSNGPVRPMDRAGAPHRKGPPKPRGE
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcaggcgctgtg
atgagggccgttgccaatgtcggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgttgctcgccggccgtgacgtcctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtgctggccccgacccgcgaactggccatccaggtcgccgaggcgttccagaagtat
gccgaagccattccgggcttccgcgtgctgccggtgtacggcggccagccgtatgcccag
caactgagtgcgctcaagcgcggcgtgcatgtcgtggtcggtacccccggccgcgtgatc
gatcacctggaccgcggtacgctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcgaagcggtactgaaaaagttg
ccggaaaagcgtcaggtggcattgttctcggccaccatgccgccggccatccgtcgcatc
gcgcagacctatctgaaggatccggccgaagtcatcatcgcggccaagaccaccacttcg
gccaacatccgccaacgctactggtgggtgagcgggctgcataagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcacgcaccaaggccggc
accgaagagctggcgcagaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggcggcgcgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctatgtgcatcgcatcggccgcaccggc
cgtgccggacgcacgggcgacgcgatcctgttcgtgacgctgcgcgaaaaggggatgctg
cgctcgatcgaacgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggat
gcggtcaacgacacgcgcgtggcgcgtttcatgacccgtatcaccgagaccctggccggc
ggccagatcgacatgtaccgcgatctgctgcagcgctatgaggccgaaaacaacgtgccg
gcgatcgatatcgccgccgcgatggccaagctgctgcagggcgatgcgccgttcctgctg
actccgccggtgcgtggcgcacgcgaagacgccgcgccgcgcgagcgtcatcagcgtgcc
gatcgtggcgaccgcccgcgcttcgagccgaagttcgagcgcggcccgcgggccgacggt
gagcgcgccccacgtccgccgcgtggcgacgatgccggcggcgagcgtccgcgtcgcgat
ccggtcgccccgcgtggcgagccggaattgggcatggagagctatcgcatcgaagtgggc
cacagccatggcgtgaagccggccaacatcgtcggcgcgatcgccaacgaagccgggctg
gaaagccgctatatcggccggatcgacattcaggacgattattcgatcctggatctgccg
gccgacatgccgcgcgaactgctcacccacctgaagaaagtctgggtgtccggtcagcag
ctcaacatgcgcaagctggaagagggcgaggcagccgcgtcgccggccaagccgcgcttc
ccgcgtggcggcaagccgtccggtcgttcgaacggcccggtccgtccgatggaccgcgct
ggcgcaccgcaccgcaagggcccgccgaagccgcgcggcgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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