KEGG   Xanthomonas phaseoli: XppCFBP6546_00915
Entry
XppCFBP6546_00915 CDS       T05156                                 
Symbol
ligD, XppCFBP6546P_00915
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xph  Xanthomonas phaseoli
Pathway
xph03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XppCFBP6546_00915 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xph03400]
    XppCFBP6546_00915 (ligD)
Enzymes [BR:xph01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XppCFBP6546_00915 (ligD)
DNA repair and recombination proteins [BR:xph03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XppCFBP6546_00915 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ATS28618
UniProt: A0A0A6W9K7
Position
complement(2439887..2442505)
AA seq 872 aa
MSLSEYRRKRSFDKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPADDV
RRAGAGKTQRKALTTVPTPVAKKRGTWAKQALALSNARRAEMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTDGKVRLWSRNALEWTDKTPEIADAIQSLGLRSAQLDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLEQVLEAAPN
THLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQDYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTRQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGAGPAASS
SAKRAPKKRAAKDAATQAPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KRDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDEE
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaaaacccgcgagccggagccg
ggcaaagccctgccgccgggccagcgtgcgatcttcgtggtgcagctgcaccacgccagc
cgtcgccattacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcgcatggcggtggaggtggaagaccacccg
gtcgattacgccagtttcgaaggcgagattcccaagggcgaatacggtggcgggcacgtg
gcgcagttcgaccatggcgtgtgggcgaccgcgggcgaccccgaagcgcagttggccaag
ggacatctgcgcttcgagttgttcggcaacaagctcaagggcggttggcatctggtgcgc
tcgggcaagcccgcgcggcagccgcagtggctgctgttcaaagaggacgatgcctacgcc
ggtacattagaggccgacgacctactggccgacgtcgctgccgcgcctgccgacgatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcactgaccaccgtgccgacgccggtg
gcgaaaaagcgtggtacgtgggcgaagcaggcgctggcgctgagcaacgcacgtcgcgcc
gagatggaggatgcgccgttcgcgccgcagctggccaagctggggcagtccccgcccgaa
ggcgcgcagtggctgcacgaaatcaaatgggacggttaccgcatcctggctactgtgaca
gacggcaaggtaaggctgtggtcgcgcaatgcattggagtggaccgacaagacgccggaa
attgccgatgccatccagtcgctgggcctgcgcagcgcgcagctcgatggcgaattgatc
gccgggcgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgagcgc
caggtgccgctggcgttggcggtgttcgatctgctgcacgtggacggggtggacatcagc
gaggcgccgttgcgcgagcgcaaacagctgttggagcaggtgctggaggctgcacccaac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaagcgcgcggatcgcccgtatcgcgacggg
cgcagtgacgattggcgcaagaccaagcaactggccagccaggactatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgttggccacgccggac
ccggtgcatggctggttgtacgtgggccgtgtgggttccgggttctccgatgccctgatg
cgtgaggtcacccggcaactggaaggtggcgggcgcaagcctaccgcgcacattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgtggcattggggggcaacagctgttgcgccaggcctcgttcaaggcgctgcgcccg
gacaaacgcattgccgatctggccgacagcgatgcaggagccggcccggctgcatcgtcg
tctgccaagcgtgcgccaaagaaacgtgctgccaaagacgccgcaacccaggcgcccaaa
cgtgcagcgacgcgagcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctacccacgctgtccagcccgaccaagttgatctacccggatatccgcgcgacc
aagcgcgatgtctgggactactaccaggcggtgatggatcacctgttaccgcagatcgta
ggacggccgctgtccatcatccgctgccctagcggtgccgaaaaaccgtgttttttccag
aagcaccataccgccggcctcgagcgcgtgagctcggtcaagctgaccgaagagaccggc
accaacgcgtattacctggtggtcgaagacgcgcccgggttgctggaactggtgcagttc
aatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtggccgaccgg
gtggtgttcgatctcgatcctggaccggacgtgccgtttgccgaggtcaaacgtgcggcc
aacgatatccgcaagctgctggcgcagctggagctggaatcgttcctgcgtgtctccggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgactgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcgcaggccgagccgcagcggttcatcgcc
acagccaccaagcggctgcgcaacaagcgcatcttcgtcgactacctgcgcaacggccgt
ggcgccactgcagttgcgtcctattccttgcgtggtcgtccgggggcgccagttgcgttg
ccgttggcgtggtcggacttgtccaagctgcagcgcgccgatgcgttcaccttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggacccttgggcagacatggaccgcatccgg
cagaacctggcgcgctgggcggagcaggacgaggagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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