KEGG   Xenorhabdus poinarii: XPG1_1309
Entry
XPG1_1309         CDS       T03805                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
xpo  Xenorhabdus poinarii
Pathway
xpo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xpo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XPG1_1309 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xpo03019]
    XPG1_1309 (rne)
   03009 Ribosome biogenesis [BR:xpo03009]
    XPG1_1309 (rne)
Enzymes [BR:xpo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     XPG1_1309 (rne)
Messenger RNA biogenesis [BR:xpo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     XPG1_1309 (rne)
Ribosome biogenesis [BR:xpo03009]
 Prokaryotic type
  rRNA processing factors
   XPG1_1309 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CDG20964
UniProt: A0A068R1N7
Position
complement(1294818..1298063)
AA seq 1081 aa
MKRMLINATQQEELRVALVDGQRLYDLDIEGPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSHGRPNIKDILKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRIELKEALSSLEVPEGMGLIVRTAGVGKSAESL
QGDLNFRLKHWEAIKKVADSHPSPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
RQHITALGRPDFASKIKLYNGEVPLFSHYQIESQIESAFQREVRLPSGGSVVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHQIHAIVPTQIASYLLNEKRKAVSEIEHRQGGVGVVIVPNDQME
TPHFSVLRVRKGEEISTLSYNLPKLYEVEMATVQDDGQHERKRPEQPAISTFELSTEATA
SASETAIAKTKEKKAAVNNQKQTEKPGLFSRFFSALKKMFSSEEETQPQEKNKKSSGNEN
RRYPERRGPRRQNQRRERNENETRNNREREEQRKGRHSQQKNPVQDNTVIDNEAREAQQQ
QRREQRVERQRRRQEEKRQQQLEAKTQQTENQPNIVEEVVEERQPVMPRRQRRQLEQKIR
ITDAVKPETTVATLPAALPELVSESSHKETNVSVAAVIETKIEATRQSEIPQDTVAPDVT
SHATAPQNNEQQDTTMPRRSRRSPRHLRVSGQRRRRYRDERNLTQSPVPLEMAVVSPELA
SGKVWVRYPVTPVTVTESETQAPVDVMNKAVEEKTAPVHQEQVVLEPSIAEATAPHIELV
EQQDATTNHDLAKTDDVSSVVSVEPALAPSQVAVSESVPSINHERKQQSEVLEVLSDTES
HSLVSCNAKETPLTAEPITVTPIVEPEYHEEQPTVSTEIRAKAEDAKTEETKVVKSSIIL
EKYRHAYSPMTKAPAPDLASESVVITEWLRPDYPFKGKGGAGGHSATSVAISAMFKPQSH
E
NT seq 3246 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcaacccaacaggaagagttgcgtgttgcccttgttgat
gggcaacgtctttatgatttggatattgaaggtccaggacacgaacaaaaaaaggccaat
atatataaaggtaaaattacacgaattgaacctagcctagaagccgcttttgttgattat
ggtgcggaacgtcatggcttcctacccattaaagaaattgctcgcgaatattttccaagt
aattatcattcccacggtcgtcctaacattaaggatatccttaaagaaggtcaggaagtc
atcgttcaagttgataaagaggaacgcggcaacaaaggtgcagccttaacaacgtttatc
agtttggcaggtagctatctggttctgatgccaaataacccaagagcaggcggaatttct
cgccgcattgagggagatgatcgcatcgaattaaaggaagccctttcttcccttgaagtt
cctgaaggtatggggttgattgttcgtactgccggtgtaggcaaatcagctgaatcctta
caaggcgatttaaacttccgtctgaaacattgggaagcaatcaaaaaagtggcagacagc
cacccctccccattcctgatccatcaggaaagcaatgttatcgtacgcgcattccgtgat
tatctgcgtcccgatattggggaaattttaattgataatcctaaaattttagacctggca
cgtcagcacatcaccgctctggggcgtcctgattttgccagcaaaattaaactgtataac
ggcgaagttcctctgtttagccattatcaaatcgaatctcaaatcgaatccgccttccag
cgtgaagttcgtttgccttccggtggttccgtcgtcatcgatacaacggaagcgttaacc
gcgattgatatcaactcatcccgttcaacccgtggtggtgatattgaagaaaccgccttt
aacaccaacctggaggccgcagatgaaattgcccgtcaattgcgtctacgtgatctgggt
ggtcttattgttatcgattttattgacatgacgccggtgcgccatcaacgtgaagtggaa
aaccggttgcgtgatgctgtacgtcaggatcgtgcccgtattcaaattggccggatatcc
cgttttggcctactcgaaatgtcacgtcagcgtttaagcccatctcttggcgaatccagt
caccatgtttgtccccgttgtagcggcaccggcaccatccgagataacgaatcactgtct
ctctctattctgcgcttaatcgaagaagaagcactgaaagaaaacacccatcagattcac
gccattgttcctacgcagattgcttcctatttactgaatgaaaaacgcaaagcagtcagt
gagattgagcatcgtcaaggcggtgttggtgtggtcattgttccaaacgatcaaatggaa
acgccacacttctctgtgttacgtgtgcgtaaaggcgaagaaatttcaacgctgagttat
aacctgccaaaactgtatgaagtagagatggcaacggttcaggatgatggtcagcatgaa
cgcaaacgtccagaacaacccgctatttcaacgtttgagctatctacagaagcaacagca
tctgcctcggaaacagcaatagccaaaacaaaagagaaaaaagccgcggttaataatcag
aaacaaactgaaaaaccaggtttattcagccgtttcttcagcgccttgaaaaaaatgttc
agtagtgaggaagaaacacaacctcaagaaaagaacaaaaaatcgtctggcaatgagaac
cgtcgttatccagaacgtcgcggcccacgccgtcaaaatcagcgtcgtgaacgtaacgaa
aatgaaacacgcaataaccgtgagcgtgaggaacaacgcaagggtcgtcatagccagcag
aaaaatcctgttcaagataacacggtgatcgataatgaagcgcgtgaagcacagcaacaa
caacgccgtgaacaacgcgttgagcgtcaacgtcgtcgccaggaagaaaaacgtcagcaa
caactggaagcgaaaactcagcaaacggaaaatcaacccaatatcgtcgaagaagtggtt
gaagaacgtcaacctgtcatgcctcgtcgtcagcgccgccagcttgagcagaaaatccgt
atcactgacgcagtgaagccagaaaccaccgttgcaaccctacctgccgcactacctgaa
ttggtatcagaaagcagtcacaaagaaacaaacgtgtccgtggccgctgtcattgagacg
aagattgaagcaactcgtcaatctgaaataccacaagatacggttgcaccggatgttact
tcacacgctactgcgccacagaacaatgagcagcaagacaccacgatgcctcgtcgttcc
cgccgttctccacgccatcttcgggtcagcggtcagcgtcgtcgtcgctatcgtgatgaa
cgcaacctgactcaatctccagtccctttggaaatggctgtcgtatcaccggaattagcg
tcgggcaaagtgtgggttcgctatccagttacccccgtgaccgtgacagaatcagaaacg
caggcacctgtggatgtcatgaacaaggcagttgaagaaaaaaccgcccctgtacaccag
gaacaagtcgttctggagccatcaatcgcagaggcgacagcacctcatattgagttggta
gagcaacaagacgctaccaccaatcatgatcttgctaaaactgatgacgtttccagcgtg
gtatcagtagagccagcattagcaccgtctcaggttgcggtatcggagagcgtgccatct
atcaaccatgagagaaaacaacaatcagaagttttagaagttttaagtgatacagagtca
catagcctggtttcgtgtaatgctaaagagacaccgcttacagcagaacccattactgtg
acgccgattgttgaaccggaatatcatgaagaacaacctactgtcagcacagaaatacgt
gctaaggcagaagacgctaaaacggaagagacaaaagtggttaagtcttcgattatcctg
gaaaaatatcgtcacgcttattccccaatgacaaaggctcccgcacccgatctggcgtcg
gaatctgttgttatcaccgaatggctacgtcctgactatccgttcaaaggcaaagggggt
gccggtggtcattctgcaacaagcgttgcgatttcagctatgtttaaaccgcagtcacac
gaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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