KEGG   Xenopus tropicalis (tropical clawed frog): 100101755
Entry
100101755         CDS       T01011                                 
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100101755 (sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    100101755 (sf3b3)
   03041 Spliceosome [BR:xtr03041]
    100101755 (sf3b3)
   03036 Chromosome and associated proteins [BR:xtr03036]
    100101755 (sf3b3)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     100101755 (sf3b3)
Spliceosome [BR:xtr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100101755 (sf3b3)
 Complex B
    100101755 (sf3b3)
 Complex C
   U2 SnRNP specific factors
    100101755 (sf3b3)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     100101755 (sf3b3)
    TFTC complex
     100101755 (sf3b3)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 100101755
NCBI-ProteinID: XP_002931705
Xenbase: XB-GENE-921994
UniProt: A0A6I8Q0Q8
Position
4:75028406..75069413
AA seq 1217 aa
MFLYNITLQRATGISFAIHGNFSGTKLQEIVVSRGKIIELLRPDANTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIIILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
IAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQDSLSPIMSCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKIIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGAERQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVAKDLILNPRSVAAGLVYTYKLVNNGEKLEFVHKTPVEEVPAAIAPFQGRVL
IGVGKLLRIYDLGKKKLLRKCENKHISNFIVGIQTIGQRVILSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTSCLLDYDTVAGADKFGNICIVRLPSNTNDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSVQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPICGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPVKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttctttacaatattaccctgcagagggcaacaggcatcagctttgccattcatggc
aacttttcaggaactaaattgcaggaaattgtggtttcacgtgggaaaattatagagttg
cttcgacctgatgcaaatactggcaaagtgcatacgcttctgactgtggaggtgtttggt
gttatacgctctcttatggcattccgtttgactggtggtacaaaggattatattgtagta
ggcagtgactcagggcgcattatcatcctggagtaccatccttctaagaacatgtttgaa
aagatccaccaagaaacctttggaaagagtgggtgtcggagaattgtgcctggtcagttt
attgctgtggatcccaaaggcagagctgtaatgataagtgcaattgagaaacagaaatta
gtctatattctaaacagagacgcagcagctcgactcacaatctcttcaccactggaagca
cacaaggctaacactctagtgtaccatgttgtaggagtcgatgtgggctttgaaaaccct
atgtttgcttgcctggagatggattatgaggaagctgataatgatccaactggagaagct
gcagccaacacgcaacagacattgacattttatgagttagacctgggactaaaccacgtt
gttcggaagtacagtgagcccttggaggagcatggaaacttcttaattacagtacctggt
ggatcagatggacctagtggagttcttatttgttcagaaaactacatcacatacaaaaat
tttggtgatcaaccagatattcgctgtcctattcctaggagacggaacgacttggatgat
ccagagcgtggcatgatatttgtttgctccgctacgcacaaaaccaaatccatgtttttt
ttcttggctcaaactgaacaaggagatattttcaagattacactagaaactgatgaggac
atggttacagaaatccgcctgaaatactttgacacagttccagtagcagcagctatgtgt
gtgcttaaaacaggcttcctctttgtagcctcagaatttggaaaccattacctctaccaa
attgctcacttgggtgatgatgatgatgagccagagttctcctctgctatgccccttgag
gaaggagacacttttttctttcagccacgccctctgaagaatcttgtgcttgttgatgaa
caagacagcctttcccctattatgagctgccagattgctgacttggcaaatgaagacaca
ccccagctatatgttgcttgtggtcgagggccacgatcatctctccgggtcctgaggcat
ggacttgaggtgtctgaaatggctgtttcggagctgcctggtaatcccaacgctgtatgg
actgttaggaggcacatcgaagatgaatatgatgcttatatcattgtatcgttcgtgaat
gccactttggtactctccattggtgaaaccgtagaagaagtgacagattctggttttctt
gggactactccaactctctcctgctccctgcttggtgaagatgccttggtacaggtgtac
cctgatggcatcagacacatacgtgcagacaagagagtaaacgagtggaaaacaccaggc
aaaaagatcattgtgaaatgtgctgtaaatcagcgtcaggtagtgattgctctgactgga
ggagagctggtgtactttgagatggatccttctgggcagttaaatgagtacactgaaaga
aaagaaatgtcagctgatgtggtatgcatgagcctggctaacgtaccccctggagaacag
cgttcccgattcttagctgtagggcttgtcgataacactgttcgtattatcagtctcgac
ccttcggattgtctgcagccacttagtatgcaggcattgcccgcacagccagaggccctg
tgtattgtagagatgggtggtgcagaaagacaggatgagctgggagaacgtggttctatt
gggttcctttatcttaatataggacttcagaatggtgtattgcttagaacagtcttagac
ccagttactggtgatctttctgatacccgaactcgatatcttgggtctcgacctgtcaag
ctcttcagagttagaatgcagggacaggaggcggtcctggccatgtcaagtcgttcctgg
ttgagctattcttatcagtcacgcttccacctcaccccactttcttatgagaccctggag
tatgcttctgggtttgcatctgaacagtgtcctgaaggaattgttgctatttctacaaac
acactgaggatcttagctctggagaaattgggagcagtgtttaaccaggtggctttccca
cttcagtatactccacgcaagtttgtcattcaccctgaaagtaacaatcttatcattatt
gaaactgatcataatgcttatacagaggctacaaaagcccaacgcaaacaacaaatggca
gaggaaatggtagaggcagcaggggaggatgaaagagagctggcagcagagatggcagct
gcattcctgaatgagaatctgccagagtccatctttggagctcccaaggctggcaatggc
cagtgggcatcagtcattcgtgtcatgaaccctatccaaggaaatactcttgatctggtg
caactagaacaaaatgaggctgctttcagtgtggcagtgtgccgcttcactaatactgga
gatgattggtatgtcttggtgggggtagctaaagaccttattctgaatccccggtctgtt
gctgctggattagtttacacttacaaactggtgaacaatggggaaaaattggaatttgtg
cacaagacacctgttgaggaggtccctgctgcaattgcaccttttcaggggagggttttg
attggagttggaaagttgttgaggatatatgaccttggaaaaaagaagcttctgagaaaa
tgtgaaaataagcacatttcaaactttattgtgggaattcaaactattgggcagcgtgtc
atattgtctgatgtgcaggagagtttcatatgggttcgttacaagcgcaatgaaaaccag
ctgatcatatttgcggatgacacatacccacgctgggtcacaacttcctgcctcctggac
tatgatacagtagctggagcagacaagtttggaaatatctgcatagttcgattaccttcc
aatactaatgatgatgttgatgaggatcctactggtaacaaagcattatgggacagaggt
cttctgaatggagcatctcagaaggctgaagtaattgtaaattaccatgttggagagact
gttctttcagtacagaagactacactaatcccaggaggctcagaatccctggtgtacact
accttatcaggaggcattggtatccttgtaccattcacatcacatgaggatcatgatttc
tttcagcatgtggaaatgcacctgcgttcagagcatcctccaatctgtggcagagaccac
ctaagcttccgctcatactatttccctgtcaagaatgttatagatggggatctttgtgag
cagtttaattccatggagccagtcaaacagaaaagtgttgcagaggaactggaccggaca
ccacctgaggtttccaagaagcttgaagacattcgtacacgttatgccttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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