KEGG   Xenopus tropicalis (tropical clawed frog): 100379740
Entry
100379740         CDS       T01011                                 
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    100379740 (tnrc6a)
   03036 Chromosome and associated proteins [BR:xtr03036]
    100379740 (tnrc6a)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100379740 (tnrc6a)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    100379740 (tnrc6a)
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 100379740
NCBI-ProteinID: XP_031749695
Xenbase: XB-GENE-981714
UniProt: A0A8J1IY59
Position
9:20111125..20157627
AA seq 1886 aa
MGEPTLQALVLQTYAFYINTALYSFSNYVFMRETWKLQLPKTLKEILAVPDQIISQPSSV
NQNIGISTATSIQHNNAKRPSSISPQQQQPVPHYPLCEIPPQFRHQEQKHLVKCGQQLPS
IAANLGLATKVLNRSRSSTVVYQEGPVTEVQGSSKEHPELNHGSLGSHYENTHWGPVSSN
GDSSTTWEKVIVDGTEKVWPSITGTSSELTSECMDIDSSPSSGAGKSHLVPFGDTTEEMD
TMRNGIGHSSQSKLLVGNNSNNAGNGSINGPWAVTHGTVISTCQDGPDSNSDSRHNRINA
WGTVNTSVNGVLNPSTLNMNGNHGAWPILDSNGHALKGSNNSGTNVPSSTIGQVSNNRSI
NPKMGSSAPGSWGNLQENGDPELSGTRKASFSGRPQNLNTEMTGPNNTTNFMTSSLPNSA
GLLQTNELPNSTGHGAWSVSNMNHSPLHTPSVTNGTSIPHLSNGEEKNSGSYGTTWGTSG
SSYSGDKISVPKGQANGDTVNATIMQPGLYGPNGPNNKINGNKGGLWESGTVNSQNMHWG
SGNAGTSGGSQRGWGNAAQNTGTNLSNGGWNKLPNNQHSNEGENKENGRKTSNTWKSAEE
ENAGQISAGSKGIEANVWAKTTGTGESEGSVDSTGSQSEYGTGHGLQEIRKTDQQTLLQS
IVNKGDLDPRVLCNTGWGQIPIKQNTAWDTDAASSLSNRKTDNGTEAWGCSVSKTSNSGG
WVDKPNPNSNDTSSVSGWGDPKSATGWGDAKGAVSQGEWEDQFAATTGMVKSNQSWGNNK
EDKSNWNDAQKVKQGWGSHSGDSWGENSKSNHWGTAKSSSSSDSERSVSGWSEPSRSNSW
GSGNQNNASSWAEPSKSTSAQGWGEPKKPNQGNGDVSKCGPNHMESEHLQASSAEWNKKQ
ESGSWGAQPATNKSSGWSGGSLSTPTKEDEPTGWQEPSPESVRRKMEIDDGTAAWGDPNQ
YKFKNVNMWDKNTSKNMSAEEHQGQVYALPPTSSTMPNKESSSSNSNSSGWGETWSESRA
PVVDNGTAAWGKPVESSGGWGNRSTNGVTSGWNHTPIGQQAPGKPGPKSMQDSGWCGDDT
SGPGSRHGSWGEDEDVEIGMWTSGSSQETNQSVNWPPYMKKMPTKGPLKNGNKQEENWMN
PFVKQFSNLGFSRESPEDSLQSNKMELSGGILPDKRMEMDKSGLGIGDYSRVIGKVPGPR
HHPKESSMDFNAYFDKDGIVSEEPQSMQFISNQNTKLPPLNSALSSQSLSSFPGLGMPNV
NSVRQNGNPSMFGVGNAAQARGAQQPPAQSLNSSQPNLRAQVPPPIIPPQVPPSLLKYPP
ANGGLNPLFGPQHVAMLNQLSQLNQLSQLQRLLNQQQKIQNQRGVPSGGRQQHEQARSLG
TQQPARQLDPNLLMKQSISQSQQQMLHQPPMKSFLENVLPHSAPELPKVPSPISSFGGFP
SGLNSNSNVNMDLGVVKEPQSRLRKWTTVDSMSSNTSLDQNSSNHGAISSGFRLEDSPFG
SYDFMNSSNSPSSPPGSIGDGWPSAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYV
TPGSVINNLSINTVRGVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYSVSHSSTAQST
SVRNSDPKPAWSPGSVANTSLAHELWKVPLPSKNISAPSRPPPGLTGQKPPLSTWDTNSL
RLGGWGSSDSRYTPGSTWSENSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLN
LPHGTALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTPSPGWQ
SLGSGHSRLGSLDSPHSISNRGDINHWNSPGASGSSSGDLHGTSLWGTPNYSTSLWGNPS
NEGRGLSSPSPVPAFLSVDQLNGEPM
NT seq 5661 nt   +upstreamnt  +downstreamnt
atgggtgagcccactttgcaggcccttgtacttcagacatacgctttctacataaataca
gcattgtattcattcagcaactatgtattcatgagagagacttggaagctgcagctacca
aagacgttgaaggagatcctagcagtgccagatcaaataataagccagccttcgtctgtc
aaccagaatatcggtatttccacagcaaccagcattcaacataataatgccaagcggccc
tcatcaatcagtccgcagcagcagcaaccagtgcctcattaccctctttgtgaaatacca
ccgcagttccgacaccaggaacagaagcatcttgtgaagtgtggtcagcagttacctagc
attgcagccaacctggggttagccactaaagtattgaacagatccagaagcagcactgtg
gtttaccaggagggacccgtgacagaagtgcagggaagttctaaagaacatccagagctc
aatcatggtagcctaggctctcactatgaaaacacccactgggggccggtctcttccaat
ggtgattctagcactacctgggaaaaagtcattgtagacggcacagaaaaagtgtggcca
tcgatcacaggcactagctccgagttgacctcagaatgtatggatattgactcttccccc
agctctggggcaggaaagagccacctagtgccgtttggggataccacagaggaaatggat
actatgagaaatggcattggacatagttctcagagcaaacttttggttggcaacaacagc
aataatgcaggcaatggaagtattaatgggccgtgggccgtgacccatggaactgtaata
agcacatgtcaagatggccccgatagcaattcagatagtaggcacaacaggattaatgct
tggggcaccgtgaatacttcagtgaacggagttctaaatccaagcactttgaatatgaat
ggcaaccatggtgcctggcccattttggatagcaatggacatgcccttaaagggtcaaat
aattctggcacaaatgttccaagcagtactataggtcaggtgtctaacaatcggagtatt
aaccctaaaatgggcagctcagcccctggctcctggggaaatcttcaggagaatggggat
cctgaactcagtggaacacggaaggcttcttttagtgggcgacctcaaaaccttaacact
gaaatgactggaccaaataacactactaactttatgacctctagtttaccaaactctgct
ggcttattgcagacaaatgaactccctaattctacagggcatggggcttggagtgtgagc
aatatgaatcattctcctcttcacaccccttcagttacaaatggcacttccattcctcac
ctaagtaacggtgaggaaaaaaacagcggatcatacggtactacatggggtacttccggc
tcctcttattctggagataagatttcagtccctaaagggcaagctaatggtgacactgtg
aatgcgactataatgcagccaggcctatatgggcccaatggcccaaacaataaaataaac
gggaataaaggaggattgtgggagtcagggactgtaaactcccaaaatatgcattgggga
agtggaaatgcaggaacttctggtggaagtcaacgaggatggggaaacgcagcacaaaac
actggcactaatctttcaaatggtggttggaacaaattgcctaacaatcagcattccaat
gagggggaaaacaaagaaaatggtaggaaaacgtcaaatacgtggaagtctgctgaggaa
gagaatgcagggcaaatttcagcaggatccaaaggcattgaggcaaatgtatgggccaaa
actacaggtacgggggaaagtgaaggtagtgtagacagcactggaagtcagagtgaatat
gggaccggacacgggcttcaggaaataaggaagacggaccagcaaactttactccaaagt
attgtaaataaaggcgacctagatccacgggtcttgtgcaacactggctggggacagatt
ccaattaaacagaacactgcctgggacactgatgctgcttcgtctctgagcaacagaaaa
actgacaatggaacagaagcttggggatgctctgtatcaaagacttctaactcaggggga
tgggtggataagcccaaccctaacagcaatgatacctcatcagtatctgggtggggagat
ccaaagtctgctacagggtggggtgatgccaaaggcgcagtaagccaaggggaatgggaa
gatcaatttgctgctactactggaatggtcaagagcaatcaatcatgggggaataataaa
gaggacaaatccaattggaatgatgcacaaaaggtcaaacaggggtgggggtcacacagt
ggtgacagctggggagagaattcaaagagtaatcactggggaacagcaaagtcaagttct
agcagcgacagcgagagatctgtatctggttggagtgagcctagtcgttccaactcctgg
ggaagcggaaatcaaaataatgcatcaagctgggctgaaccctccaagtcaacttcagct
caagggtggggtgagccaaaaaagcctaaccaggggaatggggatgtttccaaatgtggc
ccgaaccacatggagagcgaacatctgcaagcaagctctgcagaatggaacaaaaagcaa
gaaagtgggtcatggggggcacagccagccaccaataagtcttctgggtggtcgggtgga
tcactgtcaactccaacaaaggaagatgagccaactggttggcaagagccatcaccagaa
tccgtacggcgcaaaatggaaattgatgatgggactgcagcctggggtgatcccaaccaa
tacaaattcaagaatgtgaacatgtgggataaaaatacatctaaaaacatgagtgctgag
gaacaccaaggccaggtttatgcattgcccccaacttcaagtactatgccaaataaggaa
agcagcagcagcaacagcaacagctctggctggggtgaaacgtggtcagaaagcagagct
cctgttgtggataatggtactgcagcatggggtaaacctgtggaatctagtggtggttgg
ggtaatcgcagcaccaacggtgtgacatcgggttggaaccacactcccattggccaacaa
gctcctggaaaacctggtcccaaatctatgcaagatagtggctggtgtggtgatgatacg
tccgggcccgggagcagacatggtagttggggtgaggatgaagatgtggaaattgggatg
tggaccagcggttcatcacaggagaccaaccaatcagttaactggccgccttatatgaag
aaaatgcctacaaagggacccttaaagaatggaaataagcaagaggagaactggatgaat
ccatttgtaaaacaattcagcaatctgggattttcaagagagtcaccggaggactccttg
cagagcaataagatggagctgtctggagggattttgcccgacaaacggatggaaatggac
aaatccggccttggcataggggattacagtcgtgtgattggcaaagttccaggtcctcgg
caccatcctaaagagtcttccatggatttcaatgcttactttgataaggatggtattgta
tcagaagagccgcaaagcatgcagtttatttccaatcagaacacgaagcttccccctttg
aatagtgcactatcttctcagtccctcagctctttcccagggctgggaatgccaaacgtc
aattctgtgagacagaatggcaatcccagtatgtttggtgttggcaatgcagcacaagcc
aggggcgcacagcagcctccagcacaatctcttaactcatctcagcctaaccttcgtgcg
caagtgcctcctcccattataccccctcaggttcctccttctttactgaagtatccgcca
gccaatggtggtctgaaccccctttttggcccccagcacgtagccatgttgaaccagctt
tcccaattaaaccagctttcccagctgcaaaggttattgaatcagcagcagaagattcag
aaccagaggggggtgccttcaggaggtcgccaacaacatgagcaggcccggtctcttggt
acgcagcagccggcacgtcagcttgatcccaacctgctgatgaagcagagcatttctcaa
tcacagcagcaaatgcttcaccagcctcccatgaaatcctttctggagaatgtgctgccc
cactctgcccctgagctaccaaaagtcccttcaccaatcagttcttttggtggcttccct
tcaggcttgaactcaaattcgaatgtaaatatggatctcggagttgtaaaggagccacag
tcacgactgaggaagtggacaacagttgacagcatgtcttctaatacttctctggatcaa
aattccagtaaccatggtgctatttcaagtggtttcaggcttgaagattctccttttggt
tcttatgactttatgaacagcagtaactctccatccagccctccaggatctattggggat
ggctggcctagtgccaaatcgccaaatggctccagcagtgtcaactggccccctgaattc
cgtccgggtgagccatggaaaggatatccaaacattgacccagaaactgacccttatgtc
actcctggcagtgtcatcaacaatttgtcaattaatactgtgcggggtgttgaccacctc
agggacagaaacagtgggtcatcctcatctttgaacaccacgctgccttcaactagtgcc
tggtcctccattcgtgcctccaactacagtgtctcccacagcagtacagcacaaagcact
tcagtaagaaacagtgaccccaaacctgcttggtctcctggttccgtcgctaacacttct
ctggctcatgaactgtggaaagtccctttgccatctaaaaacatcagtgctccgtccagg
cctcccccagggctgactggtcagaagccacctttatccacctgggataccaactccctg
cgtcttggtgggtggggaagttctgactcaagatacacaccaggttctacctggagtgaa
aacagctcagggagaataacaaattggctcgttctgaaaaacctaacacctcagattgat
ggctctactctgcgtactttgtgcatgcagcatgggcctttgataacattccacctgaac
ctgccccatggtactgctcttgtccgttacagttccaaggaagaggtagtgaaggcacaa
aagtctctgcacatgtgtgttttagggaacactactatacttgctgagtttgccagtgaa
gaggagataagtcgtttctttgcacaaggccagtctctgactccttcccctggctggcag
tcccttgggtctgggcacagccgactgggatccctagacagtcctcacagcatctcgaac
cgtggagatatcaatcactggaacagtccaggagcttctggctctagctctggagacctt
catggcacttctctctggggcaccccaaattattcaacaagcttatggggtaaccccagt
aatgagggcaggggcttgagcagtccatcacctgtccccgctttcctttctgttgatcag
ttaaacggagagcccatgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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