KEGG   Xenopus tropicalis (tropical clawed frog): 100379843
Entry
100379843         CDS       T01011                                 
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100379843 (edc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    100379843 (edc4)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100379843 (edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     100379843 (edc4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 CelTOS SLX9
Other DBs
NCBI-GeneID: 100379843
NCBI-ProteinID: XP_002935417
Xenbase: XB-GENE-5839769
UniProt: F6UYC3
Position
4:41313440..41378124
AA seq 1383 aa
MASVTSIDVDATQHLRDILKLDRPEDSVNGNQRKSNSSFSSDLNGLLVTDQVAAVGTSLS
DTNLCSAAVLSSERQIICLSGDDSSSCIEITAKDVEIVASHDSNICSKARGSNKVKIQPV
AKYDWEQKYYCGNLIAVSNDYIAYATRGANGSAMVRVLSLTTAERILLKGITGSVTDLAF
AHLKSNHLACLDEAGSLFVWQLSMTNGKIQDDIVVHIRRPENTVLSNFRRIIWCPYIPEE
SEENVVDDTSQTVALLHEDKAEVWDLEIVRANHSTWPVDVSEIKEGFIIVKGHSGRLSEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHNGRPLSCLLFCDNHKKQDPE
VPFWRFLITGADQNRELKVWCTVSWTSLQTIQFSPDPFSSGILPGLKASLDLSAEFLILT
DVQRKVLYVMELKQNQDEGKATFTSISEFLLTHPVLSFGIQDVNHCRLRNTEVLPSEEDN
NSISQEEPLECESVESAAGVLIKLFCVHTKALQDVQIWFQPRQNTEPAILGTSQPTQEDF
ALPDHIQGINKERMSSTQGSLHGSQSELCRITTDFLLLSTDSAPKLMTPDAFMSPSVSLQ
QGISSPGSIISTLTAVTPISNTSSSDTVLSRPSEEMTLSTMLQLDTSRDGTLQSSSRNSA
VVIPGMSETSVSKPAAQLVSSNHPLELQDLDPLVVPQASPTRERSPDVISSASTAIPQDI
PEIASETLQRSYISSVPLGLSVEGCDSSHHSDSMSSAASALHLLSPHNLSLDHGHRPIII
GSSVVENERINAPSLLESKIQEDNVDIGLPQPWPAAPDITKETRNSLDSSRNGQDRGDNS
FHRHNYHLLQQHDSQDASAEQSDHDDEVASLASISGSFGGKGQHLPIKDWKSKLSPRSSP
KLRRKSKKDEMELTQSPRISDHMANYELQEELLCMLRNQQKELCDLRQNQLELMKKLTDH
MDAVQSSIMGHVERVIDTQQEQEQRRVERILSDGHERNGQLQEYLSQQLSHSLSGSLCNR
VDKIIREEMKKTISQCITKTLDPVTAQLTSTVAAKVTAVEGVLKENVTKMVKSKNVTDAI
GRVAAESLQAVIQSSYREAFQSIVLPAFERSCQSMFQQINGSFKQGTQEYMQQLEAHLRS
RKMNEQETRDPLVTQLQQMVDSLQSITDQLASNIASNVRTEVQHQIHIAVGNMQDSILSQ
VQRIIKEEVSHAMKEQQAAVTSSIMQAMRSAAGTPIPSSHMDFHSQQTHILQLMQQGQIN
KAFQQALTASDLNLILYVCETVDPQQVFGQHPCPLSQPVLLSLIQQLSFDLGSRTEIKLN
YLEEAVMHLDHSDPVTRDHMGTVLNQVRQKLFQFLQAEPQNALQKPARRLLIMLQGLALP
TLS
NT seq 4152 nt   +upstreamnt  +downstreamnt
atggcttcagttaccagtattgacgtggacgcgactcagcatctaagggatatcttaaaa
ctagaccgacctgaagattcagttaatggaaaccagaggaaatctaactcctccttcagc
agtgatctgaatggtcttcttgttactgatcaagttgcagctgtgggtacctccttgtct
gatacaaacctctgcagtgctgcagtgttgagttcagaaagacagatcatttgcctatct
ggagatgacagctcttcttgcattgaaatcactgctaaagatgtagaaatcgttgccagc
catgactctaatatatgcagcaaagcaagaggcagcaacaaggtcaaaatacagccggta
gctaaatatgattgggaacagaagtactactgtggcaatctgatagcagtatcaaacgac
tacattgcatatgctactagaggtgctaatggatccgccatggtcagagttctaagcctt
acaaccgctgagaggatcttactgaaaggcattacaggaagtgtaactgacttggcattt
gcacatctcaaatctaaccatctagcatgtttggatgaagcaggtagcttatttgtgtgg
cagttgtcaatgacaaatggaaaaatccaagatgacattgttgtgcatatacgaagacca
gaaaacactgtgttaagtaacttccgcagaattatctggtgcccgtatatcccagaagaa
agcgaagagaatgttgttgacgatacaagccaaacagttgccttgctgcatgaggataag
gctgaagtgtgggatttggaaattgtgcgcgcaaaccacagcacttggccagtagatgtc
agtgaaatcaaagaaggattcataattgtgaagggacattctgggcgtctaagtgaaggt
gcactttctcctgatggaacagtcctggccacagctagccatgatggctatgtgaagttc
tggcaaatatacatagagggacaggatcaaccaaggtgtctgcacgagtggaagcctcat
aacggaaggcctctgtcctgtctactgttttgtgacaatcataaaaaacaagacccagag
gttccattttggaggtttttgatcacaggagcagatcaaaacagagagctaaaggtgtgg
tgcacagtctcctggacaagtctgcaaacaatccaattttctccagatccatttagttct
ggtattttgcctgggcttaaagcatcattggatttgtctgcagaattcctgatactgact
gatgttcagcgaaaggttttgtatgtaatggagctaaagcagaatcaggatgaaggaaaa
gctacctttacatccatttcagaattcttgctcacacacccagtcctcagttttggtata
caggatgtgaatcattgtcgtctccggaacactgaagtattgccatcagaagaagacaac
aacagtatcagccaagaagagcccctggagtgtgaatcggttgaatctgctgctggtgtg
cttataaaactgttttgtgtacatacaaaagcactgcaagatgttcagatctggtttcaa
ccccgtcagaatactgaacctgctatattgggaacatctcaaccaacacaggaagatttt
gcccttcctgatcatatccaaggcatcaacaaggagagaatgtcttccacgcagggatct
ttgcatggctcccagtcagaattgtgcaggatcactactgacttcctactcctttctact
gactctgcgcccaaactaatgacacctgatgcgttcatgagtcccagtgtatcactacag
cagggcatttcctctcctggaagcatcataagcacacttacagcggttacacccattagc
aatacctcaagcagtgatacagtcctgtcaagaccatctgaggagatgactttaagcaca
atgttgcagttagacacttcgcgtgatggaaccctacagtccagttcaagaaattcagct
gttgtcatcccaggaatgtctgagacatctgtatcaaaaccagctgctcagttggtgtcc
tccaaccatcctctagagctgcaagatttggaccctttggttgtaccacaggcttctccc
acacgtgaacgttctcctgatgtcatatccagtgcatccactgcaatacctcaggacatt
ccagagattgcctctgagacactgcaacgtagttatatttcttctgtacctttgggcttg
tctgttgaaggatgtgactcctcccatcatagtgacagcatgagctcggctgcatctgca
ttgcatttgctttctccccataatctttctttagatcatggacacagaccaataattatt
ggatcttcagtagtggagaatgagcgaatcaatgcaccatctttgctagagagcaaaatc
caagaagataatgtggatataggtttaccacagccttggcctgcagcacctgacattacc
aaagagacaaggaatagtttggacagttcaagaaatggtcaagacaggggagacaactct
tttcacagacataactaccatttactacaacagcatgacagtcaagatgccagtgctgaa
cagagtgatcatgatgatgaagttgctagtttggcgtcaatttctggaagctttggaggc
aagggtcaacatcttcccattaaggactggaagagcaaattatcaccacgttcatctcca
aaactacgtcggaagtcaaagaaagatgaaatggaactgacacaatctccacgaatttca
gaccatatggcaaattatgagttacaagaagagttgttatgtatgttgcgcaaccaacaa
aaagaactttgtgatctacgtcaaaatcagctggaacttatgaagaaacttacagaccat
atggatgcagtgcagagctccataatgggacatgttgaacgtgtaattgatactcagcaa
gagcaggaacaaaggagagttgagcgaattttaagtgacggacacgaaaggaatggtcag
ctgcaggaatacctttcacaacaactttctcattcgttgtctggatctctttgtaaccgt
gtggataagatcataagggaagagatgaaaaagactatttctcagtgtattaccaaaaca
ttggatccagtaacagcgcagttgactagtacagtggcagcaaaagttactgccgtggag
ggggtactgaaggaaaatgtcaccaagatggttaaatcaaaaaatgttactgatgccatt
ggtcgagtagctgcagaatctcttcaggcagtcattcagtcttcatacagagaagctttt
caaagtattgttcttcctgcctttgagaggagctgtcagtccatgtttcagcaaataaac
ggcagtttcaagcaaggcacccaggaatatatgcaacagctagaagctcatctaagaagc
agaaaaatgaatgagcaggaaacacgtgaccctctggtgacacagctccaacagatggta
gatagccttcagtccataacagatcagctggcatccaatattgctagcaatgtacgcact
gaagttcaacaccagatacacattgcagtgggaaacatgcaggactctatcctatcacag
gtacaaagaatcatcaaggaggaagtgagccatgctatgaaagagcagcaagcagctgtc
acatcgagcattatgcaggctatgagatctgcagcaggaactcctatcccatcctcacat
atggattttcactcccagcagactcacatcctgcaacttatgcagcaaggtcaaatcaac
aaggctttccagcaggcactgacagcctcagacctaaaccttatcctttatgtttgtgag
actgtagacccacaacaagtatttgggcaacatccatgccctctcagtcagcctgtcctt
ctgtccctaattcagcaactatcgtttgaccttggcagtcgtacagaaattaagctcaat
tatctggaagaagcagtgatgcatctagatcacagcgatcctgtgaccagagaccacatg
gggaccgttttaaatcaagtgcggcaaaaacttttccagttcttgcaagctgaacctcag
aatgctttacaaaaacctgctcgacgtctgttgataatgctacaaggactggcgcttcct
actctgagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system