KEGG   Xenopus tropicalis (tropical clawed frog): 100379860
Entry
100379860         CDS       T01011                                 
Symbol
rttn
Name
(RefSeq) rotatin
  KO
K16484  rotatin
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:xtr03037]
    100379860 (rttn)
Cilium and associated proteins [BR:xtr03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   100379860 (rttn)
SSDB
Motif
Pfam: RTTN_N Arm_2 DUF383
Other DBs
NCBI-GeneID: 100379860
NCBI-ProteinID: XP_002939666
Xenbase: XB-GENE-5892772
UniProt: A0A8J1JP27
Position
6:101343649..101427643
AA seq 2223 aa
MEISTLVKKLGHQLVEIRERALKNILCKLDHNLVSLVDLAQEKTFFLHLLEWFNFPAVPM
KADVLHLLNKLVKHSEAAQWLIQLGAVDFFSQLRSNVEPDLQAVVDSILDGLFLLPTERA
YNGQDSPHDVKSWTSQEYTAIQKEGTLTDGYFQQLLTLQNSENSPEETAASHCPVKCLKF
STFPWLPLTTTDKHVLSSNESSLRSNNPSLVWRSCQLLQDVVMQDFPPEIFLQRPKIVQS
LLSLFGLASEKDGQQHLASQSISCLSQLCTLLRNRFSFHRDPNFLSTKQEIVSHNSFASY
CHDAQANNSQVPSPQNENFRPSVVGRTSQRLRGDGQDWDTASSSGNSTQAHGPSRSSHLS
PMDIGHLEFPELEHEDTLEIQFQQLSLPQFCVLLLEAATPLLKSDRKKQIMCILEMLREN
IILLSETVSDDVWEDESLTGRELRHNLLSILDTLGDAILYHKNNNSSEQPSSSLMSHRMA
FISISLFTMRLLQSILPVEKANDVLPESLMNALFLISLDLPFRMAYPSVHESVISFMEQL
NSEHCGIYKQSSETAYSIECATTFMLYSRKEGKKDFIELVELAEKALSSLPFHKHFPLVQ
KFIQICSDIFKSAQSSPVLLEESQKVLLCLMSHWMPLVKAEAYKTNLEIVKDSLGIHNVT
KPVSSVCQGIHFLLHSKVLYEISTFGLQESNSEICTAAKTILSYLLQGRLVMENHTWNTL
IESICPVIPVLQGFADTEETLGTSILTLCETSANDDGILPKTARIRAALRQLFSKKQAVR
SVAIKWIAVHLMNEEDSTCKRPQILGSTLSNAVCLFILEQPLDLKLDNNEKSFFMEDTVQ
KVCEIFLSDTVDFALQKSAAEQMSVIAQDVKMHSVLKKPGVVDKILHYLYKYVQQDGKAF
ECMILPCLMLLRKIVYADPGFRLTLSQKPCFLLTLFRVSLMMQQEVTSLTEAAALLCMLL
FDEISRMDTWSEAIPFCTQPPFGLPVTVVRRFHLPVLVSAYHAVSPYTMASSLSAEWLTS
KPVSVMLRMSWNISWHQGVDPFLKTVANEQEEIENSLETLKLSPEEVLTLKMTHSVSGLQ
DCLSSIIQAVSHGEVRSAVARMNFYLLNDRLVLNCLTACYMSSLKCLPWHTALSRFLLVH
PACEEDEKLLADVIRFLNKILQEQKGNSDPHDLQWILEMLLKQSPSPLFELMEQKEYPAK
KDLDDTRAAVRQHLQKELMMFFNTLMLCLTSVTDRKCLVLGGTFRTQLALHLLNRLKISD
APHFYGLPSLAQTLRGMSHVTSQPGWSAYSPSTEPFAVCVKTLTSLLEIISSFYVEWGGN
ALSYMGKGVTKSTVLCLLHLSHEMTAQAKNTDWIHLWTLPYDHGTEDQVLSRLGLEWLIP
LWVDRDPEVRFTSLGIASALTCLQKGCLALSASCQNISGGLWGTVFSIFLNQNECSMVRR
EAAFVLQNLLVIPMPESLEDSKEYEFQGPCIHDEESGLTLVGRAALQVLLHDYHLYDHVG
QMVKNCYFGHYTFGYNYSSFSSKAAKDNINGSEDSLYLWQSVHSFSGSKSTLTTLINPGS
SSTVSTDHLLSVSIPLCLDNVADLLSDQDHNSKLKTPSISTENSEETNSFPEQCSVVTPC
LLSAVCSLLENLLAVNPKVTVMELSERCIVKCMASLLTPGLLERFFSDLKDPLTHGQAKT
MKSQAIVLWQYLSSMSGLAHTCLLADANLVVQDEIINPILAVIFSSLSMKNNKTWDTELQ
YAIYQAWTDMFTFLAILLKKSGQIILFQLEAVLAKYGNILLDTVDECLSLATSHSKLYTA
CLQFLALLFSEHGKHPKLSSSTTAALCSLLDGNENMGYVLCKSLLRSCDEKATDNPLRQI
CTRTLILLLAVSRSARKYSLDAHLVDGCIQEIKHIHAQLNLDSLRPGKAAHKKKEENHLK
QLKVLMQILRNCLYQNEEGKAAAIDSQFPFVLHSLWPWLLMDDALMQGALQLLCVYTAYY
PAACTSLCWTNTGVTTPQPPPKTGASNSLMHNILKLASDSTANNSTVQQMAFALLSNLVV
IQDSKCIIQKSNFLQNFLTLSLPKAGTKSLCILANNWLKFLWNLSMGSDGQQMILKLKGS
LDLLVELTTYKQKMISPVALLILHNVCFNTANKAKILSNDKAVAVLSTCLESDNLLDQQI
GCSAFWALLHGYQKAKATLKNPLIRGRIEEALSTLRKNSSVLQGRLEIYHLKCLENLDLL
LSN
NT seq 6672 nt   +upstreamnt  +downstreamnt
atggagatttcaactttagtcaagaaacttggtcatcaattagtggagattagagagcga
gcactaaaaaatatcctttgcaagcttgaccataatttggtttcgttagttgacttggca
caagagaagacattcttcctacatcttctagaatggtttaatttcccagcagtgccaatg
aaagcagatgtactgcatcttttaaataagctggttaagcactctgaagctgcacagtgg
ctgattcaacttggtgcagtggatttcttttctcaactgcggtcaaatgtagaaccagat
cttcaggcagtagtggatagtattttggatggtttgttccttcttcctacagaacgggcc
tataacggccaagattctcctcatgatgtaaaatcctggacatcacaagaatatacagct
atacagaaagaaggcaccttgactgatggatattttcaacaattgcttacattgcaaaat
tcagaaaattcgccagaagaaactgcagcaagccactgtccagttaaatgtctgaagttt
tctacctttccttggttgccgttaacaacaacagataaacacgtgctctcatcaaatgaa
agctctctaagaagcaataaccccagcttagtttggagaagttgccagcttctacaggat
gttgttatgcaagattttcctcctgaaatttttcttcaaaggccaaaaattgtacagagc
ctgctgtctttatttggacttgcatcagaaaaagatggccagcaacatttggcttcacaa
tctatttcatgtctatcccagttatgtacacttcttagaaatagattcagttttcacaga
gatccaaattttttaagtacaaagcaagaaatagtttcccataattcttttgcgtcttac
tgccatgatgcacaagctaataattctcaagttccttctcctcaaaatgaaaactttaga
ccctctgttgtgggtcgtaccagtcagcgtcttaggggagatggacaagactgggatact
gcatcatctagtgggaatagcacgcaagcccatgggccctccaggtcttctcatttatcc
ccaatggatataggacacttggagtttccagaactagaacatgaagatactttagagata
cagtttcagcagttgagcctgcctcagttttgtgtattacttctagaagctgctacacct
ctgctaaaatcagacaggaagaagcaaataatgtgtattcttgaaatgctccgagaaaat
ataatactgctcagtgagaccgtttcagatgatgtctgggaagatgaaagccttactggg
cgagaactgagacataatcttctttccatcttggatacacttggggatgctatattgtat
cataaaaataacaatagttctgagcaacccagctcttctcttatgagtcacagaatggca
tttatcagcatctcgctttttacaatgcgcctgctgcaaagcattctccctgtggaaaag
gcaaatgatgttctgccagagagcttgatgaatgctttgtttcttatatctctcgacctg
ccgtttcgcatggcatatcctagcgttcatgaatctgttatatcttttatggagcagctg
aattctgagcactgtggcatttataaacaatcctcagagaccgcatattcaattgaatgt
gcgacaacttttatgttgtattccaggaaagaggggaaaaaggattttatagaattggtg
gagctggcggaaaaggccctttctagccttcctttccataaacattttcctttggttcag
aaattcattcagatttgctcagacatttttaagtctgcacaaagttctcctgttctacta
gaggagagtcaaaaagttctgctttgcttgatgtctcattggatgccattagtaaaagca
gaggcttataaaacaaacttagaaattgttaaggattccttgggaattcataacgtcacc
aagcctgtatcatcagtatgtcaaggtatacatttcctcctccactcaaaggtgctatat
gaaatatctacatttggattgcaagaatcaaacagtgagatatgtactgcagcaaagaca
attctctcatatttacttcaaggacgccttgtcatggaaaatcatacttggaatacctta
attgaatcgatttgtccagtaataccagttttacagggatttgcagatacagaagaaacc
ctaggtacatccatcttaactttatgtgaaacatctgcaaatgatgatgggattttacct
aaaactgcgaggataagagcagctctgcggcaacttttttctaaaaaacaggcagtccgc
tctgtggccatcaaatggatagcagtacatttaatgaatgaggaagattcaacctgcaag
cgaccccagattctaggaagtactttgtctaatgcagtctgtttgtttatcctagaacag
ccacttgatcttaagctagataacaatgaaaagtcattttttatggaagacactgttcaa
aaagtatgtgaaatatttctctcagacacagtggattttgctctgcagaaatctgcagct
gaacagatgtcggttatagcacaggatgtgaaaatgcatagtgttcttaaaaagccgggt
gtagtggacaaaatccttcattacttatataaatatgttcaacaagacgggaaggcattt
gagtgtatgattctgccatgcttaatgcttttacgcaagatagtatatgctgatcccgga
tttcgactgaccctttcgcagaaaccttgcttcctacttacattattccgagtatctttg
atgatgcagcaagaagtaacttcactcacggaagctgctgctttattgtgtatgctcctg
tttgatgaaatatcaagaatggacacatggtcagaggccatacctttttgcacccaacct
ccttttggacttcctgtcactgtagttagaagattccaccttcctgtactagttagtgcc
tatcatgctgtcagtccctacacgatggcctcttccttatctgctgagtggttaacctcg
aagccagtgtcagttatgcttcggatgtcttggaatatttcttggcaccagggagttgat
ccgttcttaaaaacagtggcaaatgaacaagaagaaattgaaaattctttagaaacatta
aagttatccccagaagaagttctgacattgaagatgacacactctgttagtggcctgcaa
gattgcctgagttctatcattcaggctgtgtctcatggggaagttcgctctgctgttgct
aggatgaatttttatcttctaaatgacagactggttttaaactgcctgactgcctgttac
atgtcttccttgaagtgtctgccatggcatactgcattgagtaggtttttgctggttcat
cctgcttgtgaggaagatgaaaagcttctggcagatgtgatacgttttttaaataagata
ttacaagagcagaaaggaaattcagatccacacgatctccaatggatactagagatgctg
cttaaacaaagcccaagtccactgtttgagctaatggagcagaaagaatatccagccaaa
aaggatttggatgatacacgagcagctgtgaggcagcatctgcaaaaagagctgatgatg
ttttttaacacactaatgctctgtttaacttcagttactgatcgaaagtgtttggtactt
ggtggaacattcagaacacaactggcattgcatttgcttaaccgtttaaaaatatcagat
gctcctcatttctatgggctgccatctcttgcacagactttaagaggaatgagtcatgtg
acttcacagccaggttggagtgcctacagcccatctacagagccatttgcagtttgtgtt
aaaacactgactagccttctggagatcatctcatcattttatgtggaatggggaggaaat
gctctttcctatatgggtaaaggtgtaacgaagagcacagtattgtgcttgcttcacttg
tcccatgagatgacagctcaagctaaaaacacggactggatacatctttggactttacct
tatgaccatggcactgaagatcaggttttatctcgacttggtttggaatggttgatacct
ttatgggttgatagagaccctgaggtaaggtttacaagtcttggaattgcatcagcttta
acttgtctgcaaaaaggttgccttgctttgtctgccagctgtcagaacatttcaggtggc
ctgtggggaacagtgttcagtatattcctaaaccagaatgaatgtagcatggtgcgcaga
gaggctgcctttgttcttcaaaatttgcttgttataccaatgcctgaaagtctcgaagat
tcaaaagagtatgagtttcagggcccctgtatacatgatgaggagtctggattaacattg
gtaggcagagctgctcttcaagttttattacatgactaccatttatatgatcatgttggt
cagatggtgaaaaactgctactttggtcattacacctttggctacaactattccagcttt
tcaagtaaagctgcaaaggataatattaatggatctgaagactccctttacctctggcaa
agtgtgcatagcttttcaggctccaaatcaacattgaccactttgattaatcctggatca
tcatccacagtcagtacggaccacttactttcagtctctatacctttgtgcttagataat
gttgctgatctactttcagatcaagatcataacagcaaacttaaaacgccatctataagc
acagaaaacagcgaggagacaaattcttttcctgagcagtgttctgtagttaccccatgt
ttgctgtctgcagtgtgcagtttactcgaaaatctgctggcagtgaatccaaaagtcaca
gtaatggaattatccgagagatgcatagttaaatgtatggcaagccttctaacccctggg
ctgctagaaaggttcttttctgatctcaaggacccacttactcatggccaagcaaaaacc
atgaagtctcaggctattgtcttgtggcaatatttatcttccatgtcaggacttgctcac
acatgcctgcttgcagatgccaatcttgttgtgcaggatgaaattataaatccaatactt
gctgtgatattttcttccctgtctatgaagaataacaaaacctgggacactgaactgcag
tatgccatttatcaagcatggacagatatgtttacatttttagcaatattgttaaaaaaa
agtggtcaaattatcctttttcaactggaagctgtgctagcaaaatatggaaatattctg
ctggatactgtggatgagtgtttaagcctagccacaagccattcaaagctctatacagcc
tgtctgcagttccttgcattgctcttcagtgaacatggaaaacatcccaagctatcttca
tccacaactgcagcactgtgctccctcctagatggaaatgaaaacatgggatatgtcctt
tgcaagtcactccttcggagctgtgacgaaaaggctacagataaccctctcagacaaatt
tgtacaagaaccttaatcctactgttggctgttagcagaagtgcaaggaagtacagtcta
gatgctcacttggtggatggctgtattcaagaaataaaacacattcacgcccagctaaac
cttgattccctgaggcctgggaaagcagcacacaagaaaaaggaggaaaatcatctgaaa
cagttaaaagttctaatgcagattctaaggaattgtctttatcaaaatgaggaaggaaaa
gctgcagccatagattcccagtttccttttgttctacattctctttggccctggttattg
atggatgatgctttgatgcaaggtgctctgcaattactttgtgtctacacagcatactac
cctgcagcatgtacttccttatgttggacaaacactggagtgacaacaccacaacctccc
cccaaaacaggtgcaagcaattcccttatgcacaacatattgaagctagcctctgactct
actgctaataacagtactgttcaacagatggcttttgctctactttcaaatcttgttgta
attcaggactccaaatgtattattcagaagagtaactttctacagaactttcttaccctt
tcgctgccaaaagctggaaccaagagcctttgtatcttggcaaataattggctaaaattt
ctttggaacctgtcaatgggaagtgatggtcaacaaatgatcctgaaactaaaaggaagt
ttagaccttcttgttgagttgacaacatacaagcaaaagatgatttcccctgttgccttg
cttattttgcataatgtctgtttcaatacagcaaataaagccaagatactatcaaacgat
aaagctgtggctgtgctttctacatgtctggaaagtgacaatctccttgaccagcaaata
ggatgttctgcattttgggcactactccatggttatcaaaaggccaaagctactctcaag
aatccattaataaggggaagaattgaagaagccttgtctacgttaagaaaaaattccagt
gttttacaagggagacttgagatttatcatttaaagtgtttggaaaatctggatcttctt
ctgagcaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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