KEGG   Xenopus tropicalis (tropical clawed frog): 100486063
Entry
100486063         CDS       T01011                                 
Symbol
col6a5
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
  KO
K06238  collagen type VI alpha
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510  Focal adhesion
xtr04512  ECM-receptor interaction
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100486063 (col6a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100486063 (col6a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100486063 (col6a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xtr04147]
    100486063 (col6a5)
   00536 Glycosaminoglycan binding proteins [BR:xtr00536]
    100486063 (col6a5)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100486063 (col6a5)
Glycosaminoglycan binding proteins [BR:xtr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100486063 (col6a5)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   100486063 (col6a5)
SSDB
Motif
Pfam: VWA VWA_2 Collagen VWA_3 Kunitz_BPTI VWA_CoxE
Other DBs
NCBI-GeneID: 100486063
NCBI-ProteinID: XP_012820988
UniProt: A0A8J1JND1
Position
6:51661038..51766008
AA seq 2771 aa
MGFWKVFLACVLGSYSVNVSASQKTVCTEASIADIVFLMDGSWSIGTENFITMKNFLYTL
VNGFDVGLDKIQIGLIQYSDNARTEFFLNSYSNKEDVLKYIQNLKYKGGGTKTGLSLEFM
LTQHFSEAAGSRAAEGVPQIAVVITDGQAQDSIREPAIAVKNAGIILYAIGIKDAVLSEL
NEIASDPDDKHVYSVADFNALQSISQNMIQVLCTTVEEAARQTGQIAQVCRTANQADIVL
LVESTTRMGDATFEKAKNFLYDLVSNLDVGINKIRIGLVTYNDETNPEFLLNSYSSKTEI
LESIQNMKYVEGYTYTGRALEYVNTTYFTQAAGSRFEESVAQILIIVTEGDSSDTLTEPA
KELKSRGISVYVVGTNIKYDRQLQEASSKPDEKFFYQLDDFDDSENVTEQLLKNLCFSID
LNIQVYSKRYADVVFLVDSSTSMGTIFFQKMKDFIIHIINQLNVGINKHRIGLAQYSGLP
QTEFLLNHYETKEEILKHIKETFTYRGGPLKTGHALEFVRSTFFIEEAGSRINYGNPQFL
VVITSSKSEDAVRRHAEELKSVGVTTISVGIGNSDRKELEKIATDPFVFQTTGLQHISNL
QQDVANVIIAEDMLQFSPVSVVPAVCSSASVADIVFLIDESSSIGPINFQLTRVFLHKVV
SALDISLSNVRVGLVLYSDEPRLELKLNTFNEKYEILDFITKLPYRGGKAHTGAALDFLR
KKMFTKQNGGRPHQGVQQIAVVMTNGQSMDNFTKPAAKLRRSGVEVFAVGFQNINDTELD
IIASHPPRKHVTNVESFLQLSNLEFRIQKRLCNEIVVKSFAVPAIARAVKEGCVDTEEAD
IYFLIDGSGSIYPEDFEDMKKFMIELISMFQVGANRVRFGVVQYSDVRRTEFFISEHNTQ
KMLKDAISQIEQLGGGTLTGEALTSMKQLFVNAAKDRPHKVPQSLVVITDGESQDRVTEA
AAEIRNDGITIFAIGVKNAVEEEIRDIAGSNEKMFFVNNFDSLKVIKNDLARELCTPEAC
KNMKADIVFLVDSSASINSDDYETMKEFMESMVKQAEIGPDRVQIGLIQFSSETKEEFPL
NRYKRKDEIQSAIRGIQQLSQGTLMGEALKYTLPYFSASKGGRVNTKQYLIVITDGEAQD
AVGNPAKAIRDHGVIIYAIGVQQANNTQLLEIAGKQEQVYYEDSFDSLAFLNKNIMFEIC
NPQESCKKTEVADIIFLLDASASITRGEFRLMQRFVEAVVNDSLVGKDNVQFGAVVYGTN
PAEQFSLNTYSTKLDILKAVFSLPQVSGYTYTAKALEYTRIRFGTSYGGRPGISHILILV
TDGATTEADRPNLPIVSKALKDDGIIVFAVGVGKAVPQELQQIAGYPDRWFLVQNYKGLD
NIHDNITQVVCDESKPACSHEQLDLVFLIDGSASITSSNFTSAKTFMKEIVDSFTISENR
VRIGVAQYSANPKKEFFLNEYYSSSDMKKQIDSISQLKATTYTGKGLRFVKQFFDPANGG
RKNVPQYLIVMTDGMSNDSVNEDAAALRSSGVKIFSIGIGLRNSFELVMIAGSPKNVYEV
ETFQALDSIKRQIVAQVCEPSDQPIIGKECSLDITISVDYSRRAMLSTVPRVQQKLQQFL
PPVLQRISSLSNISCASGSQINLRFRYAVAAQDRLTFDSDFEKFNEDIIKKFIAEQSSVD
TYLNAKFLQSLWNKYIGLPSQKAKIILVFTDGLDESSEVLKATTESLRKQGLDALLFIAL
EGVKDFTELQNLEFGRGFSYQQPLSIALHDLPSVMLKEMDTVAERKCCNVVCKCLGQDGP
LGSPGALGTKGQPGIKGSQGHPGEEGGHGERGFRGLNGTRGESGCPGRRGLKGARGIRGD
KGDDGEFGIDGVPGEQGEPGGRGASGERGDTGAQGRKGPRGQPGEKGENGLRGDPGEPGT
NINIQGPIGLKGNPGRQGEAGSDGVEGEPGNNGPNGPQGRRGPPGLKGARGFPGEPGNKG
DSGIQGIQGSQGMPGPPGPQGPQGLSGRQGDAGAPGASGSFGKPGAPGLKGEPGENGEKG
EPGIPGRRGLPGLDGPDGYGPPGLKGEKGHLGFPGDPGPQGEDGDPGIAGNGGPKGISGR
RGNSGPPGTNGQRGERGPRGPMGAKGLPGTMPMTPCELVAFTRENCPCFASASKCPVYPT
EIVFALDASQDVPPAAFQRMKNTIISIIEKLDISESNCPRGARVAVVAYNSNTKYLIRFS
DYKRKSLLLEAIRGISPERSSSRRNIGEAMKFVGRNIFKRIRHGIHVRKVAVFFANGPSP
DADAINSAVLEYSALDIIPIVIAFNNVPNVVAAFSADETRRFQVFVWSRPEDQRLELISY
CTLCYDKCTPDEECELDQMPATLIDMDIAFVLDSSHNVQADVFEEMKDFVSSMLDTVYIS
TRPAVSETEARVALVQQAVKDFGPNRNTSPVKTEFDLLRYNSANMMKRHIKQSVRQLNGP
SAVGNSVQWVIDNIFLKTPMPRKHKVLFLILASPTSYWDREKLKEVSKKAKCQGFAIFVL
GFGKTISELEMTQLPSLPQDQHLLRLISMSKPELVYAKKFSHAFFNLLDRGFNHYPPAVL
QAECQGRGDSSFSVVRSFPDTRLTQVDTAAAEVPDETIEVVEVLGTPAPEEIVGKKTEKI
IINKVADNCLLDVNHGTACRGYQRMWYYIKSIDACSQFWYGGCDGNGNRFSSETECLQTC
SSKSKKANGEVRSLKKDVCTMKQEEGKCADYILKWSYNQGKKACVQFWYGGCGGNGNRFD
TQEQCEATCMS
NT seq 8316 nt   +upstreamnt  +downstreamnt
atgggattttggaaagtatttctcgcctgcgtgcttggcagctactcagtcaatgtctca
gcttctcagaaaacagtgtgcacagaggccagtattgcagatattgtattccttatggat
ggatcctggagcatcggaacggaaaactttatcacaatgaagaactttttgtacactttg
gttaatggttttgatgttggcctagataagatccagattggcctaatccagtacagtgat
aatgcacgtacagaattcttcctaaacagttacagtaacaaagaagatgttttgaaatat
attcagaatctaaagtataaagggggtgggacaaagactggcttaagtctggagttcatg
ctgacgcagcactttagtgaagctgcaggcagcagagcagcagaaggtgtgcctcagatt
gcagtcgttataactgatggacaagctcaagatagcatcagggagcctgccattgcagtg
aagaacgctggaatcatactgtatgccattggcattaaagatgcagttttatctgagctt
aatgaaatagccagtgatccagatgacaaacatgtttatagcgttgcagactttaatgca
ctgcaaagtatttcccaaaacatgatccaggtgctctgcacaactgtagaagaagcagca
agacagacaggtcaaattgctcaagtttgcagaactgccaatcaagctgacattgtgctg
ctagtcgaaagcacaacaagaatgggtgacgctacttttgaaaaagcaaagaattttctt
tatgatttagtttctaatttggatgttggaattaataagattcgcattgggcttgtaacc
tacaatgatgagacaaatccagaatttttgctaaacagctattcttcgaaaactgaaatc
ttagaaagtattcagaatatgaaatatgtagaaggatatacctacacagggagagccctt
gagtatgtaaatacaacctactttacacaggcagcaggcagtagatttgaagagagcgtc
gctcaaattcttatcattgtgacagaaggagactcttcagataccctcactgagcctgct
aaagaactcaaatcaagaggcatatctgtttatgtggttgggacaaacatcaagtacgat
agacagcttcaggaagcatcaagcaagcccgacgaaaagttcttttatcaactcgatgat
tttgatgactctgagaatgtcactgagcagctgttaaaaaacctgtgctttagcatagat
ttgaatattcaagtatattcaaagcgctacgctgatgttgtatttctagtcgattcttct
acaagcatgggaaccatcttttttcaaaagatgaaggatttcatcatacacataataaac
cagttaaatgttggaataaataaacaccgtataggactggcacagtacagtggtctaccc
caaactgaatttctactgaatcattatgaaaccaaagaggagatactaaagcacattaag
gaaacattcacatacagaggtggccccttaaaaacaggacatgctttggaatttgtacgc
tcaacatttttcatagaagaggctgggagtaggattaactacggcaacccccagttctta
gtggtcataacatcatcaaaatcagaggatgctgttagaagacatgccgaggaactcaaa
agtgttggggtcacaaccatctctgttggcattggcaattctgatcgaaaagaactggaa
aaaattgctactgatccttttgttttccagaccacaggtttacagcacatttcaaattta
cagcaggatgtggccaatgttattatagcagaagacatgctacagttttccccagtatca
gttgtaccagcagtttgctccagtgcttctgtagctgacattgtgtttctaattgatgaa
tctagcagcattggccccatcaactttcaactaaccagagtctttctacacaaggttgtt
agtgcactggatatttccttgagtaatgttagagtgggcttagtgctttacagtgatgag
ccaagacttgaacttaaactgaacacttttaatgaaaaatatgaaattttggacttcata
actaagctgccatacagaggaggcaaagcacatacaggtgctgcgctggactttctaagg
aaaaaaatgttcaccaaacaaaatggcggccggccacatcaaggagttcagcagatagcg
gtggttatgactaatgggcagtccatggataattttactaaacctgctgcaaaactgaga
cggtctggcgtggaggtttttgctgttggctttcagaatatcaatgatacagaactggat
atcatagcatctcacccaccgcgaaaacatgtcacaaatgtggaatctttcctgcagcta
tccaaccttgagttcagaatacagaaacgactttgcaatgaaattgttgtgaagtcattt
gcagtacctgcaattgctcgtgcagtgaaggaagggtgtgtggatacagaagaagcagat
atatactttctaattgatggttctggcagtatatatccagaggactttgaagatatgaaa
aaattcatgattgaattaataagcatgtttcaagttggtgccaacagagtacgctttgga
gttgtccaatactcagatgttcgtagaactgaatttttcatcagtgaacacaacacccag
aaaatgttaaaggatgctatttctcaaatagaacagttgggcggtggtaccctaacagga
gaagctttaacgtcaatgaagcaactttttgttaatgcagctaaagatcgccctcataaa
gtaccccagtcattggttgtcattacagatggagaatctcaagaccgggtcacagaagca
gctgcagaaattagaaatgatggcattactatatttgcaattggtgttaaaaatgcagtg
gaagaagagattagagatatagcagggtcaaatgagaagatgttttttgttaacaacttt
gattccctgaaggtgatcaagaatgatttggctcgtgaattgtgtacacctgaggcatgt
aagaacatgaaagctgatatcgtgtttctggttgatagctctgcaagcattaacagtgat
gattatgaaacaatgaaagaattcatggagtcaatggtcaagcaggcagaaatcggccct
gatagagtccagattggtttaattcagtttagctctgaaacaaaggaagaatttcctctc
aacaggtacaaaagaaaggatgaaatacaatcagcaataagaggcatccaacaactgagc
cagggaacccttatgggggaagcccttaaatatacattaccttattttagtgcttccaaa
ggaggccgtgtaaataccaaacaatatctgatcgtcataacagatggtgaggcccaggat
gctgtgggaaacccagccaaagcaataagggaccatggagttatcatttatgccatagga
gtacaacaagccaacaacacacaacttctggagattgctggcaaacaagagcaggtgtat
tatgaagatagctttgattccctagcttttttgaacaagaacatcatgtttgagatttgc
aatcctcaagaatcttgcaaaaagactgaggtggcagacatcatatttctgttggatgct
tctgcaagcataaccagaggagagtttagactcatgcagagatttgtggaggctgttgtc
aatgactctttggttggaaaggataatgttcaatttggagcagttgtttacggcacaaat
ccagcagaacagttttcactcaatacgtattcaactaaacttgatattcttaaggctgta
tttagtttaccccaagtatctggatacacatacactgcaaaagcgctggaatacactcgg
atacggtttggtacatcatatggtggaagaccaggaatttcacatattctaattctagtc
acagatggagccactactgaagctgatcgccctaacctaccaatagtatcaaaggctttg
aaggatgatggcatcattgtctttgcagtaggagttggcaaggcagttcctcaagagctt
cagcagattgcaggatacccagacagatggttcttagtccagaactacaaaggcctggac
aatatacatgataatataacacaggttgtatgtgatgaatcaaaaccagcttgctcacat
gaacagcttgatcttgttttcctgattgacggctcagcaagtatcacttctagcaacttc
acaagtgccaagactttcatgaaagaaatcgttgacagctttacaatttcagagaacaga
gtgcgtattggagtcgcacagtacagtgcaaatcccaagaaagaattcttcttaaatgag
tactactccagctccgacatgaagaaacagattgatagcatctcccaactgaaagctacc
acttacactggcaaaggcctacgatttgtcaaacagttctttgatccagcaaatggcggc
cgtaagaatgttccgcagtacctgatagtcatgactgatggcatgtctaatgacagcgta
aatgaagatgctgctgctttgcgaagcagtggagtaaagatcttttccattggtattggt
ctgcggaacagttttgagcttgttatgattgccgggtcacccaaaaatgtttacgaagtg
gaaacgttccaagcgctggactctataaagaggcagattgtggcacaagtctgtgagcca
tctgatcagcctattataggtaaagaatgcagcttagatatcaccatatccgttgactac
tcaagaagagcaatgctatctactgtcccccgtgtgcagcagaaattgcagcagttcctc
cctccggtgcttcagcgcatttcctcgcttagcaatatcagctgtgcctctggatctcaa
attaacttacgcttcagatacgctgttgcagcacaggacagactgacatttgattccgac
tttgagaaatttaacgaggacatcattaagaagtttatagctgaacagtcttctgttgat
acatatttaaatgcaaagtttcttcagtccctctggaacaaatacataggtttgccgtct
cagaaagcaaaaattattctggtttttactgatggactggatgaaagttctgaagtactc
aaggcgactactgaatctcttcggaaacaagggttggatgcactgttattcattgctctt
gagggggtgaaggattttacagagctgcaaaacttagagtttggaagaggattttcttac
cagcaacctctgagcattgcgctgcatgatctgccaagtgtaatgctaaaagaaatggat
accgttgcagaaaggaaatgctgtaatgtagtttgtaaatgtttaggacaagatggacct
ctaggctcaccaggggctttaggaacaaagggtcagcctggtataaagggatctcaaggt
catcctggagaggaaggcggtcatggtgaaagaggattccgtgggctgaatgggacaaga
ggcgaaagtggatgtcctggtcgtaggggattaaagggtgccagaggtattcgtggtgac
aagggtgatgatggagagtttggaattgatggtgtgcctggagagcagggtgaacctgga
gggcgtggagcatcaggagaacgtggagacactggagctcagggcagaaaaggtcctcgt
gggcaacctggagaaaaaggggaaaatggactgaggggagacccaggtgagcctggaact
aacattaacattcagggacctataggactgaaaggaaacccaggacgtcagggagaggcg
ggaagtgacggtgtggaaggagagccaggaaataatggacctaatggtccacaaggccga
agagggcctcctggtttaaagggagcacgaggatttcctggagagccagggaacaaaggt
gatagtggaatccaaggtatacagggttcccaaggcatgcctggaccaccaggtccacag
ggaccacaagggttatctggacgtcagggagatgcaggtgcccctggtgcatcaggttcc
tttggcaaacccggagctccaggactaaagggggaacctggagaaaacggagagaagggt
gagccaggcattccgggtcgcagaggtttgccagggctggatggtcctgatggatatggt
cccccaggcttaaagggagagaagggtcatttagggtttcctggggatcctgggcctcag
ggagaagatggtgatcctggaatagctggaaatggtggcccaaaaggaattagtggaaga
aggggtaattctggccctccaggaactaatggacaaaggggtgagaggggaccacgtgga
cctatgggcgccaaaggattgccaggaactatgcctatgacgccttgtgaacttgtggcg
tttactcgagagaattgtccttgcttcgcaagtgcttcaaaatgtccagtttacccaact
gaaatagtgtttgctctggatgcatctcaggacgttcccccggctgctttccaaaggatg
aagaacaccattatttccataatagaaaagctggacattagtgagagcaattgccctaga
ggagcccgtgttgctgtcgttgcgtataacagtaataccaaatacctcattcgtttctct
gactacaaacggaaaagcctactgctggaagcaattcgtggcatctctccagaaagatca
tcttcaaggagaaatattggagaagccatgaagtttgtagggaggaacatattcaaacgc
attcgtcatggaatccatgttagaaaagtggctgtgttctttgctaatggcccatcccca
gatgcagatgcaataaactcggcagtgctggaatacagtgctcttgacattattcctatt
gtgattgcatttaataatgttcccaatgtcgtagcagctttttcggccgacgaaactaga
agattccaagtgtttgtatggagtaggcctgaggatcagagactagaacttatttcttat
tgtactctttgttatgataagtgtacacctgatgaagaatgtgagctggatcaaatgcct
gcaaccctaatagatatggacatagcttttgtattagacagttcacacaatgtgcaagct
gatgtctttgaggaaatgaaagactttgtgagcagtatgctggacaccgtctacatatca
acgcggcccgcagtttctgaaacagaagccagagttgccttagtacaacaggcagttaag
gactttggtccaaataggaatactagcccagttaaaactgagttcgaccttcttcgctac
aacagcgcaaatatgatgaagaggcacatcaaacaatctgtcaggcaactgaatggtcct
tctgcagttggcaattctgttcagtgggtcattgataatatcttcttaaaaacaccaatg
ccaagaaagcataaagtacttttcctcattcttgccagcccaacaagctattgggacaga
gaaaaattgaaagaagtctccaaaaaagctaagtgtcaaggatttgcaatatttgtactg
ggttttggaaaaacgataagtgagctggaaatgacacagctgccgagcttgccacaagac
caacatttgcttcgcttgataagcatgtcaaaaccagaacttgtctatgcaaagaagttc
agtcatgccttcttcaatctactcgaccgtggctttaatcactacccacccgcagtattg
caagcagagtgccaagggcgtggggactcatctttttcagttgtaagaagcttccctgac
acacggttgacacaagttgacactgctgcagcagaagttccagatgagactatagaagta
gtggaggtccttggtacacctgcacctgaagaaattgtggggaaaaaaacagagaaaata
atcataaacaaagttgcagacaactgcttattggatgtgaaccatggcacagcgtgcagg
ggctatcagcgcatgtggtattatataaaatctattgatgcatgctcccagttctggtat
ggaggttgtgatggtaatggaaacagatttagctctgaaactgagtgtctgcaaacttgc
tcttccaaaagtaaaaaagctaatggggaagtgcggagccttaagaaagatgtctgtaca
atgaaacaagaggaaggaaaatgtgcagattacatcctcaagtggtcctacaaccaaggc
aaaaaagcttgtgtgcagttctggtacggtggctgtggaggaaatggcaatcgttttgac
acacaggaacagtgtgaagccacctgcatgtcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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