KEGG   Xenopus tropicalis (tropical clawed frog): 100488612
Entry
100488612         CDS       T01011                                 
Symbol
vcam1
Name
(RefSeq) vascular cell adhesion protein 1
  KO
K06527  vascular cell adhesion molecule 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    100488612 (vcam1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:xtr04090]
    100488612 (vcam1)
   04091 Lectins [BR:xtr04091]
    100488612 (vcam1)
CD molecules [BR:xtr04090]
 Proteins
  100488612 (vcam1)
Lectins [BR:xtr04091]
 I-type lectins (Siglecs)
  100488612 (vcam1)
SSDB
Motif
Pfam: Ig_3 Ig_2 I-set ig V-set Ig_4 Ig_5 SAG ICAM_N Adhes-Ig_like
Other DBs
NCBI-GeneID: 100488612
NCBI-ProteinID: XP_002934188
Xenbase: XB-GENE-492444
UniProt: F7EI49
Position
4:108896953..108907534
AA seq 653 aa
METVKLFSVLALFIATSLAEFHMSLEPAQREISLQIGETFQFICEAFDCPNPTFNWANLM
DKTLSGSVSTEGSRSILTMQVSHESEGSYRCKVFCNQMKAEKSFTINVYSFPSDPVLHIS
SLVAGVQSNITCTVPLVYPSEMLSLRLLKDKETVAEYDTSVEIYQDGEFKLRDVSLSYAW
IPHIEDEGSVFKCEAEMLFMDEETKPITKDTKVILSIVCPPSTPSITVLPSKSVKAGENI
TLGCLAESHPQATVWWVKESGNVTNELPSENGYLGLTGVQPQDSGKYTCYVENEAGKSFS
SVLITVQVPPKNTRLTITPSELVRQGDRVIIQCMSEAFPAPTLILKRKTERGQVELETTS
GEYIITSVTVKHSGTYTCESVNPVGNEVAELHVTVQVPPQNTTVLVKPSKNVTEGDTVTI
TCETHSTTLPTILLKKVCAGNSTVQQAENGTFTLHNVTRNDTGTYVLSIINEAGNTTEVI
EINVQVPPKNTRLTITPSELVREGDHVIPHAVPPQNTTVLVKPSKNVTEGDTVTITCETH
STTHPTILLKKVCAGNSTVQQAENGTFTLHNVTRNDTGTYMVSIINEAGNTTEVIEINVQ
ARYQSPQSSFAIPIIATSLCAVSAAVIGLIVYHMKQARLQGSYSLVKALKSRV
NT seq 1962 nt   +upstreamnt  +downstreamnt
atggagactgtaaaactattctctgttctggcactgttcattgcaacctcgctggctgaa
tttcacatgtccttggaacctgcacagagggagatttctctccagattggggagacattc
cagttcatatgcgaagcatttgattgtcccaatcccacctttaactgggcaaacctaatg
gataaaacattaagtggcagcgtaagcaccgaaggcagcaggtctatcctgaccatgcag
gtcagccatgagagtgaaggaagttaccggtgtaaagtattctgcaatcaaatgaaagca
gaaaaaagcttcactatcaatgtgtactctttcccaagtgatcctgttctacacatctca
tcccttgtggctggggttcagtccaatatcacctgtacagtcccccttgtttacccctct
gaaatgctgagcttgaggttactgaaggacaaggaaacggtggcagaatatgacacatca
gtggagatatatcaagatggggaattcaagctaagagatgttagcctatcctatgcttgg
atacctcatatagaagatgaaggctcagtatttaagtgtgaggcagaaatgttatttatg
gatgaagagacaaaaccaataaccaaagatacaaaagtgattctcagtattgtctgccct
ccttcaactcccagtattactgtcttaccatccaaaagtgttaaagctggtgaaaatata
actctaggatgcttggccgaaagccatccccaggcaactgtgtggtgggtgaaagagtct
ggaaatgtgacgaatgagttaccatcagaaaatggctacttgggattaactggagtacag
ccgcaagactctggcaaatacacctgctatgtagagaatgaagctgggaagagcttttcc
tcagtattgatcactgtacaagttccacctaaaaacacaaggctcaccattacgccctcc
gagttggtgagacaaggggatcgtgtaattatccaatgtatgtcagaagcattccctgcc
cccacactgatcctcaagagaaagacagaacgtggccaggtggagctggaaactacaagt
ggggagtacattatcacatctgtaacagtaaagcattcaggaacctatacctgcgaatct
gttaacccagttggaaatgaagtggcagagctccatgtgactgtgcaagtacctccacaa
aataccacagttcttgtaaagccatccaaaaatgtaacagaaggtgacaccgtgaccatc
acctgtgagacacacagtaccacacttccaacaattctgctgaagaaggtgtgcgccggc
aacagtacagtacagcaagcagagaatggcaccttcaccttgcacaatgtcacccgcaat
gacactgggacctatgtgctcagcataattaatgaagcaggaaatacgactgaagtcatt
gagatcaacgtacaagttccacctaaaaacacaaggctcaccattacaccctctgagcta
gtgagagaaggcgatcacgtaattccccatgcagtacctccacaaaataccacagttctt
gtaaagccatccaaaaatgtaacagaaggtgacaccgtgaccatcacctgtgagacacac
agtaccacacatccaacaattctgctgaagaaggtgtgcgccggcaacagtacagtacag
caagcagagaatggcaccttcaccttgcacaatgtcacccgcaatgacactggaacatat
atggtcagcataattaacgaagcaggaaatacgactgaagtcattgagatcaatgtacaa
gctcgatatcaaagcccccaatccagctttgccattccaatcatagcaacatccttatgt
gcagtatcagcagctgtcatcggactgattgtttatcatatgaagcaggcacgtctacag
gggtcatacagtctggtaaaggctctgaaaagccgagtttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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